RNA id: TU127068


Basic Information

Item Value
RNA id TU127068
length 439
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G94201
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9169319 ~ 9169757 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggttcaaatttagtggagcaaaagtgctcctcatttgtttaataaacaattggaacagaatgcacctaataaaatctcttaaaggaacagacaatctctagcgcgcaacttctctatcttctcggagacagaaagtctgagtgatatccaaccaattggcggcccacacgcaatggcggaaggaggaacctgaagatgaataaaagaatagggaaaaggaaggtccggggtcagacccggaaagactttgttggtggttagggagagaaagtctcgaaggagcggctgatccatatgcatatgaaagatctgtttgcaatatcattttactaaagattgttatagtttaactgaacgaatcctgagtattcatttcttggtctgcctttcaacgaacacaataagtaaaggggaaactttgagaagtgaccggtggttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127065 lncRNA upstream 442 9147162 ~ 9168877 (+) False G94199
TU127056 lncRNA upstream 73027 9089828 ~ 9096292 (+) True G94192
TU127026 lncRNA upstream 167613 9001456 ~ 9001706 (+) True G94169
TU127024 lncRNA upstream 168859 9000163 ~ 9000460 (+) True G94167
TU127009 lncRNA upstream 515895 8653056 ~ 8653424 (+) True G94153
XR_005640321.1 lncRNA downstream 264964 9434721 ~ 9437621 (+) True LOC120566015
TU127117 lncRNA downstream 314246 9484003 ~ 9485965 (+) True G94232
TU127112 lncRNA downstream 324224 9493981 ~ 9495328 (+) True LOC120566016
XR_005640322.1 lncRNA downstream 324396 9494153 ~ 9495357 (+) False LOC120566016
TU127116 lncRNA downstream 370780 9540537 ~ 9541059 (+) True G94231
XM_039810147.1 mRNA upstream 85462 9080859 ~ 9083857 (+) True LOC120564889
XM_039812316.1 mRNA upstream 98643 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA upstream 98643 9067182 ~ 9070676 (+) False LOC120566074
XM_039810130.1 mRNA upstream 107283 9057341 ~ 9062036 (+) True LOC120564878
XM_039810246.1 mRNA upstream 135639 9021517 ~ 9033680 (+) True LOC120564973
XM_039812203.1 mRNA downstream 214748 9384505 ~ 9543535 (+) False LOC120566011
XM_039812202.1 mRNA downstream 214749 9384506 ~ 9543535 (+) False LOC120566011
XM_039812205.1 mRNA downstream 214749 9384506 ~ 9543535 (+) False LOC120566011
XM_039812197.1 mRNA downstream 214751 9384508 ~ 9543535 (+) True LOC120566011
XM_039812201.1 mRNA downstream 214752 9384509 ~ 9543535 (+) False LOC120566011
TU127064 other upstream 9624 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 914744 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 923498 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1264072 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 1818732 7349810 ~ 7350587 (+) True G93938
TU127128 other downstream 382539 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 402541 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 647864 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 674992 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 674992 9844749 ~ 9845981 (+) False LOC120565620

Expression Profile