RNA id: XR_005640322.1


Basic Information

Item Value
RNA id XR_005640322.1
length 337
lncRNA type read_through
GC content 0.45
exon number 2
gene id LOC120566016
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9493981 ~ 9495357 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGAGGGTGGGCCTAACAGAACCTGCATCAGCGGTGAATGGACCGGACAGATGAGATGCCTCAAACCCTGTATTGTGAATGAAGACCTCTATAGACAACACAACATTACTATAAAATCTAGTGACAGTACATTTTTCCCTCATGATGAAATAATTGAGTTCAGGTGTGCCAGAGGAGTACCAGTCGGTGCAGTGGCAATGCGTCAGAGGTGTAATGGGGGTGTGATTCTCCTGCCTACCTGCCAGTGAGAGTCATCTGAAAGTAATCTACAGAGCATGCAGACTTATCCTCCACTTTAACTGTGaacattataataaaacatacttgatctctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127117 lncRNA upstream 8188 9484003 ~ 9485965 (+) True G94232
XR_005640321.1 lncRNA upstream 56532 9434721 ~ 9437621 (+) True LOC120566015
TU127068 lncRNA upstream 324396 9169319 ~ 9169757 (+) True G94201
TU127065 lncRNA upstream 325276 9147162 ~ 9168877 (+) False G94199
TU127056 lncRNA upstream 397861 9089828 ~ 9096292 (+) True G94192
TU127116 lncRNA downstream 45180 9540537 ~ 9541059 (+) True G94231
TU127114 lncRNA downstream 46110 9541467 ~ 9543494 (+) False LOC120566011
TU127124 lncRNA downstream 52357 9547714 ~ 9551691 (+) True G94238
TU127153 lncRNA downstream 166775 9662132 ~ 9672803 (+) False G94259
TU127155 lncRNA downstream 178074 9673431 ~ 9679737 (+) True G94259
XM_039812213.1 mRNA upstream 20779 9462445 ~ 9473374 (+) True LOC120566014
XM_039812210.1 mRNA upstream 43067 9406710 ~ 9451086 (+) False LOC120566012
XM_039812212.1 mRNA upstream 43067 9406710 ~ 9451086 (+) False LOC120566012
XM_039812207.1 mRNA upstream 43067 9406710 ~ 9451086 (+) False LOC120566012
XM_039812211.1 mRNA upstream 50204 9406710 ~ 9443949 (+) False LOC120566012
XM_039812218.1 mRNA downstream 79901 9575258 ~ 9587669 (+) False depdc1a
XM_039812217.1 mRNA downstream 80079 9575436 ~ 9587669 (+) True depdc1a
XM_039812221.1 mRNA downstream 93799 9589156 ~ 9603575 (+) True LOC120566020
XM_039812222.1 mRNA downstream 119438 9614795 ~ 9671788 (+) True fnbp1l
XM_039811520.1 mRNA downstream 270719 9766076 ~ 9785140 (+) True hps3
TU127064 other upstream 334458 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1239578 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1248332 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1588906 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 2143566 7349810 ~ 7350587 (+) True G93938
TU127128 other downstream 56939 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 76941 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 322264 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 349392 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 349392 9844749 ~ 9845981 (+) False LOC120565620

Expression Profile