RNA id: TU127114


Basic Information

Item Value
RNA id TU127114
length 1677
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC120566011
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9384505 ~ 9543535 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatcaactcagacatcatggttagactcagagtttgttaaaccttctacCTGGAACCCAGGCCTCTGATCTCTGTCATGGTAAACACTGTGAGTCAACCAGggtaaaaagaaaatactggTATTAAGACGTGTTAACATTCTAAATATGCCAATTGAGCTTTTGAAACCTTTAGCCTGAATTTAGTGTTTTCACAACTTGAATTCATGATTTAGGATTTAAGCTGTCAAAGTAATAATGCCTGCGAAATACTAAACCTCgtctctgtttttattgtttttttgactAGCACTGTGAGGCAGAATATGCACTGATTTTAGCCTCTAAAGTGATTCAgatctgctccaaaatgtattgtatttatcTTTGCCCCGTGTTACAcacttccaccaagtttcagaAAAGGTTATAAGCTTTTCACAAACAAAGGCTGGTGGGCTGAGGCCAAATGTAATGACGACGTGTTGTCTGGACTTCAACAATGCATTGCTAATTAATCTTTATTGCCCTACGGGCAAGTTGTAACAAGCAAAAAAAGTAAACCAAAAAATCTATTTCAAGCTGTACAAGATATTGGTGTAAGACAGGCTACGAGAGCACAGATGGTGCTACCAGGGCCTCATGCAACAGAGATGGATGGACACCAAATCCACTTTGTCGAGGTTTTGAAGTTAACTTTATATTTCTTAGGTTACTGTCATAAGGAGTTACttttgtgtctgtattttaAAAGTGGGGAAAAAGCTTAGAAAATGGAAATAGAATTTGAAGACTCCACAGCCTTCTCTGTGatatagggggaaaaaaatagaaaggaaAAGGAAACCAGATTTGACAGGAAATATGTATATGCAATTTATAATCctaaaacttaaaaatgtttGTAGTATAAATACATGTTTTGAGATTTACCGTGGTCTGGTTAAAACTGCATATCATAACATTTCTGGTCATCCCTACTGTCCACTCTCCAAACAATGGCAAAGGGTTTAAAAGCTCAAAGAGAAGAAGGGCTAAGGGGACGACCCTGTTCAGGTCCCTAAAACAACATGGCTTGCATTTCTTGAATGTTAGCAGagttactttttcttttatctttttaatcattttatcaGATTGCCATTTTCCATGCTGAATTTGCATCTGATATTGCTGTGGCCAGACTTTAAAAATTATTTCACAATTGGCCCTTTCTGTTCCTTTCAGTGTAATTTACCGGTCACTGTGCCACAATCTAATACCTCAACTTGTACCCATATATTTTTTAGAGAGTGTAGGCTGTGGGAGTCCACCACCTCTCACAGATGGAGACATCAAGTACACCATTAAAAGTAATTACAGCCATCAAGAAAGGGTTGAATTCATGTGTCAAAGATACTACACCATGGAGGGTGGGCCTAACAGAACCTGTATCAGCGGTGAATGGACCGGACAGATGAGATGCCTCAAACCCTGTATTGTGAATGAAGACCTCTATAGACAACACAACATTACTATAAAATCTAGTGACAGTACATTTTTCTCTCATGATGAAATAATTGAGTTCAGGTGTGCCAGAGGAGTACCAGTCGGTGCAGTGGCAATGCGTCAGAGGTGTAATGGGGGTGTGATTCTCCTGCCTACCTGCCAGTGAGAGGCATCTGAAAGTAATCTACAGAGCGTGCAGACTTATCCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127116 lncRNA upstream 408 9540537 ~ 9541059 (+) True G94231
XR_005640322.1 lncRNA upstream 46110 9494153 ~ 9495357 (+) False LOC120566016
TU127112 lncRNA upstream 46139 9493981 ~ 9495328 (+) True LOC120566016
TU127117 lncRNA upstream 55502 9484003 ~ 9485965 (+) True G94232
XR_005640321.1 lncRNA upstream 103846 9434721 ~ 9437621 (+) True LOC120566015
TU127124 lncRNA downstream 4220 9547714 ~ 9551691 (+) True G94238
TU127153 lncRNA downstream 118638 9662132 ~ 9672803 (+) False G94259
TU127155 lncRNA downstream 129937 9673431 ~ 9679737 (+) True G94259
TU127173 lncRNA downstream 148435 9691929 ~ 9693033 (+) True G94266
TU127336 lncRNA downstream 357701 9901195 ~ 9902122 (+) True G94373
XM_039812208.1 mRNA upstream 35540 9406710 ~ 9505927 (+) True LOC120566012
XM_039812213.1 mRNA upstream 68093 9462445 ~ 9473374 (+) True LOC120566014
XM_039812210.1 mRNA upstream 90381 9406710 ~ 9451086 (+) False LOC120566012
XM_039812212.1 mRNA upstream 90381 9406710 ~ 9451086 (+) False LOC120566012
XM_039812207.1 mRNA upstream 90381 9406710 ~ 9451086 (+) False LOC120566012
XM_039812218.1 mRNA downstream 31764 9575258 ~ 9587669 (+) False depdc1a
XM_039812217.1 mRNA downstream 31942 9575436 ~ 9587669 (+) True depdc1a
XM_039812221.1 mRNA downstream 45662 9589156 ~ 9603575 (+) True LOC120566020
XM_039812222.1 mRNA downstream 71301 9614795 ~ 9671788 (+) True fnbp1l
XM_039811520.1 mRNA downstream 222582 9766076 ~ 9785140 (+) True hps3
TU127064 other upstream 381772 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1286892 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1295646 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1636220 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 2190880 7349810 ~ 7350587 (+) True G93938
TU127128 other downstream 8802 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 28804 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 274127 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 301255 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 301255 9844749 ~ 9845981 (+) False LOC120565620

Expression Profile