RNA id: XM_039812203.1


Basic Information

Item Value
RNA id XM_039812203.1
length 4043
RNA type mRNA
GC content 0.45
exon number 23
gene id LOC120566011
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9384505 ~ 9543535 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTGAATTTGGAGGCTGGAACAGACTTGCGTAATTCATTGCGCAATCTCtttttcctgtaaaatctacagctctcttctgtctgtgtgtgcgtttggGTGTAATAGTGTTTCAGTCTCCAGTTTCTACTTCTGTTCAGCGGTTCAGGGGAATGAAGATAAAATGCATGTAATAAACCCAATCTGTGTGCTACTTTTGTGGGTGCATACGCTGACCTTCGCGCTGATTCCAGACTGTACACTTCAACAGTTTTTAAACGGACCCAAGTATGATTCAAATTTTGACACATCTGGGCTTCAGCCCAGCTACCCTGCTGGAAAACAAATTCGAGTGGCCTGCACTGTTGGCTACAGTGGCTTTTTCAAACTGACCTGTGTCGAGGGAAAATGGGAGTCTAGAGGCACTGTATGTCAACCAAAATCATGCGGTCATCCCGGCGATGCCCAGTTTGCAGATTTTAATCTGGAAGTAGGAGACGATTTTGTCTTTGGGTCAAAAGTTGTATACACCTGCCACAAAGGTTATCAAATGGTCAGTCGCACAAACTCCCGGCGTTGCATGAATGAAGGCTGGGATGGTGTGATTCCTGTCTGTGAAGCCCAACAGTGCCCAGTGATTCATGTGGACAATAATGTCCAGGTGAATGGGGACCCAGAGGAAGCGACCTATGGCAATGTAGTTCGGTTCAGCTGCAAGTCCAACAGTTACATCCTGTCAGATCCTGCGTCAGCAGAGTTGTATTGTGATGAAAATGGAGAGTGGAGTGGCCAACCTCCAAAATGCATAGAGATTAAATGTACAGTACCTCTGATAGAAAATGGTTATGTGCCTGATCGCGATATCCGAGAGTACAAAGAACATGATGTCCTGCAATTAATGTGTGATGATCGATATAAACCCACTGAAGACAGACCTTCAAAATGCACAAAAGTAGGAATAAGAGCCGAGTGGACCCCCATACCTGCGTGTGAACCAATAAAATGTAGACTGGAGCTGATGCCAGGCGAGGGAACCAGGTATGAATCTGTTtccagaaatgtgtttttatctgGTGAGACACTGAGAGTCATTTGTGGAGAGAAGTACAAGATTTCTAACAATCAGGAATCAGCAGTAACTACATGCAATGAGGATGGAGAGTGGACTATCAGACCAGTATGCACAGAGGTCGTATGCAGCAATCGAAAACCACAACATGTGTATTCCTGGGGTATCCCTTACTGGAGAAATCAACCATTTAAAATGGGTGAGACTATAAACTATAGGTGTGAGACAGGCTTCAAGAGCACAGATGATGCTACCCTGGCCACATGCACCAGAGATGGATGGACACCAAATCCACTCTGTCAAGaAATAACATGTGACAGAAAGGATATTCAGGAGGCAGATGTTATCGGAGAATACAAGCAGACATACCGCTACAATGAACAGGTCCGTTATGTCTGCAGGGAGGGTTATCAAGGACAATTCACTCTAACCTGTAGAGAAAATGGTTGGATTGGGAATCCAAGGTGTACAGaaatAACATGCAACAGAAAGGATATCCCGAAGGCAGAAGTTATCAGCGAATACAAGCAGACATACCGCTACAATGAACAGGTCGGTTATCGCTGCAGGGAGGGTTATCAAGGAGGAGAATTCACTCTAACCTGTGGAGGAGATGGTTGGACCGGGAGTCCAACGTGTACAGAGGTCGTATGCAGCAATCGAAGACCGCAACATGTGGATTACTGGGGTATCCCTTACtggagaaatcaaccatataaaatGGGTGAGACTATAAACTATAGGTGTGAGAGAGGCTTCAAGAGCACAGATGATGCTACCCTGGCCACATGCACCAGAGATGGATGGACACCAAATCCACTCTGTCAAGaaatAACATGTGACAGAAAGGATATTCAGGAGGCAGATGTTATCGGAGAATACAAGCAGAGATACCGCTACAATGAACAGGTCGGTTATGTCTGCAGGGAGGGTTATCAAGGACAATTCACTCTAACCTGTAGAGAAAATGGTTGGATTGGGAATCCAAGGTGTACAGAAAGAACATGCAACAGAAAGGATATCCCGAAGGCAGAAGTTATCAGTGAATACAAGCAGACATACCGCTACAATGAACAGGTCGGTTATCGCTGCAGGGATGGTTATCAAGGGGAATTCACTCTAACCTGTAGAGGAGATGGTTGGACCGGGAGTCCAACGTGTAGAGAAATAACATGCAACAGAAAGGATATCCCGAAGGCAGAAGTTATCAGCGAATACAAGCAGACATACCGCTACAATGAACAGGTCGGTTATCGCTGCAGGGATGGTTATCAAGAACAATTCACTCTAACCTGTGGAGGAGATGGTTGGACCGGGAGTCCAACGTGTACAGaaatAACATGTGACAGAAAGGATATCCCGAAGGCAGATGTTATCGGAGAATACAAGCAGAGATACCGCTACGATGAACAGGTCGGTTATGTCTGCAGGGAGGGTTATCAAGGACAATTCACTCTAACCTGTGGAGAAAATGGTTGGATCGCGAATCCAAGGTGTACAGaaatAACATGTGACAGAAAGAATGTCCCGAAGGCAGAAGTTATCAGCGAATACAAGCAGACATACCGCTACAATGAACAGGTCCGTTATCGCTGCAGGGAGGGTTATCAAGGAGGAGAATTCACTCTAACCTGTGGAGGAGATGGTTGGATCGGGACTCCAACGTGTAGAGATGCATGTCCAAAGCCTGAAGTTCCAAATGGATTTGCAGTTGGCCCATACAACAACACAATATACTACAGCTGCAATGAAGGTTTTAAGCTTTTCAGCAACAACGGCTGGTGGGCTGAGGCCAAATGTAATGACAGTCGACTTCAACTATGCATCGAGAACACAAAGTGTGGAGAAACTCCTGTGATTCCAAATGGGAAAGTGGTACCTCCACAAAGGCAAGACCTAAGGCAAATCCAAGCTAGGATTACTTGTAACACAGGATACAGAACTCAGGTTGACAACTTACCTTGTCGCGAGGGAGAATGGACGTCAAATGGAATATTACTCGAAGATATTTGTAAACCAACTGCCAAGCTCTGCAACCCCCCACCTAAAGTTGAGTATGCAGTTGTTCGGACATCTTATCAGAAGGAATACTTGTCTGACTCTCCAGTGACTTATCAGTGCCATGATGGCTATGATATTGAGGGAGAAGACACAATTCTATGCAATGATGGGAAATGGGAGGAGAAGAACATAACATGCACAGaaataacATGTGACAGAAAGAATGTCCCGAAGGCAGAAGTTATCAGCGAATACAAGCAGACATACCGCTACAATGAACAGGTCCGTTATCGCTGCAGGGATGGTTATCAAGGAGGAGAATTCACTCTAACCTGTGGAGGAGATGGTTGGATCGGGAGTCCAACGTGTAGAGaaataacATGTGACAGAAAGGATATCCCGAAGGCAGATGTTATCAGCGAATACAAGCAGACATACCGCTACAATGAACAGGTCGGTTATCGCTGCAGGGATGGTTATCAAGGAGGAGAATTCACTCTAACCTGTGGAGGAGATGGTTGGATCGGGACTCCAACGTGTAGAGAGAGTGTAGGCTGTGGGAGTCCACCACCTCTCACAGATGGAGACATCAAGTACACCATTAAAAGTAATTACAGCCATCAAGAAAGGGTTGAATTCATGTGTCAAAGATACTACACCATGGAGGGTGGGCCTAACAGAACCTGTATCAGCGGTGAATGGACCGGACAGATGAGATGCCTCAAACCCTGTATTGTGAATGAAGACCTCTATAGACAACACAACATTACTATAAAATCTAGTGACAGTACATTTTTCTCTCATGATGAAATAATTGAGTTCAGGTGTGCCAGAGGAGTACCAGTCGGTGCAGTGGCAATGCGTCAGAGGTGTAATGGGGGTGTGATTCTCCTGCCTACCTGCCAGTGAGAGGCATCTGAAAGTAATCTACAGAGCGTGCAGACTTATCCTCCACTTTAACTGTGaacattataataaaacatacttgatctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127068 lncRNA upstream 214748 9169319 ~ 9169757 (+) True G94201
TU127065 lncRNA upstream 215628 9147162 ~ 9168877 (+) False G94199
TU127056 lncRNA upstream 288213 9089828 ~ 9096292 (+) True G94192
TU127026 lncRNA upstream 382799 9001456 ~ 9001706 (+) True G94169
TU127024 lncRNA upstream 384045 9000163 ~ 9000460 (+) True G94167
TU127124 lncRNA downstream 4179 9547714 ~ 9551691 (+) True G94238
TU127153 lncRNA downstream 118597 9662132 ~ 9672803 (+) False G94259
TU127155 lncRNA downstream 129896 9673431 ~ 9679737 (+) True G94259
TU127173 lncRNA downstream 148394 9691929 ~ 9693033 (+) True G94266
TU127336 lncRNA downstream 357660 9901195 ~ 9902122 (+) True G94373
XM_039810147.1 mRNA upstream 300648 9080859 ~ 9083857 (+) True LOC120564889
XM_039812316.1 mRNA upstream 313829 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA upstream 313829 9067182 ~ 9070676 (+) False LOC120566074
XM_039810130.1 mRNA upstream 322469 9057341 ~ 9062036 (+) True LOC120564878
XM_039810246.1 mRNA upstream 350825 9021517 ~ 9033680 (+) True LOC120564973
XM_039812218.1 mRNA downstream 31723 9575258 ~ 9587669 (+) False depdc1a
XM_039812217.1 mRNA downstream 31901 9575436 ~ 9587669 (+) True depdc1a
XM_039812221.1 mRNA downstream 45621 9589156 ~ 9603575 (+) True LOC120566020
XM_039812222.1 mRNA downstream 71260 9614795 ~ 9671788 (+) True fnbp1l
XM_039811520.1 mRNA downstream 222541 9766076 ~ 9785140 (+) True hps3
TU127064 other upstream 224810 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1129930 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1138684 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1479258 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 2033918 7349810 ~ 7350587 (+) True G93938
TU127128 other downstream 8761 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 28763 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 274086 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 301214 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 301214 9844749 ~ 9845981 (+) False LOC120565620

Expression Profile