RNA id: TU127117


Basic Information

Item Value
RNA id TU127117
length 324
lncRNA type read_through
GC content 0.45
exon number 2
gene id G94232
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9484003 ~ 9485965 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTACAGCCATCAAGAAAGGGTTGAATTCATGTGTCAAAGATACTACACCATGGAGGGTGGGCCTTACAGAACCTGCATCAGCGGTGAATGGACCGGACAGATGAGATGCCTCAAACCCTGTATTGTGAATGAAGACCTCTATAGACAACACAACATTACTATAAAATCTAGTGACAGTACATTTTTCTCTCATGATGAAATAATTGAGTTCAGGTGTGCCAGAGGAGTACCAGTCGGTGCAGTGGCAATGCGTCAGAGGTGTAATGGGGGTGTGATTCTCCTGCCTACCTGCCAGTGAGAGTCATCTGAAAGTAATCTACAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640321.1 lncRNA upstream 46382 9434721 ~ 9437621 (+) True LOC120566015
TU127068 lncRNA upstream 314246 9169319 ~ 9169757 (+) True G94201
TU127065 lncRNA upstream 315126 9147162 ~ 9168877 (+) False G94199
TU127056 lncRNA upstream 387711 9089828 ~ 9096292 (+) True G94192
TU127026 lncRNA upstream 482297 9001456 ~ 9001706 (+) True G94169
TU127112 lncRNA downstream 8016 9493981 ~ 9495328 (+) True LOC120566016
XR_005640322.1 lncRNA downstream 8188 9494153 ~ 9495357 (+) False LOC120566016
TU127116 lncRNA downstream 54572 9540537 ~ 9541059 (+) True G94231
TU127114 lncRNA downstream 55502 9541467 ~ 9543494 (+) False LOC120566011
TU127124 lncRNA downstream 61749 9547714 ~ 9551691 (+) True G94238
XM_039812213.1 mRNA upstream 10629 9462445 ~ 9473374 (+) True LOC120566014
XM_039812210.1 mRNA upstream 32917 9406710 ~ 9451086 (+) False LOC120566012
XM_039812212.1 mRNA upstream 32917 9406710 ~ 9451086 (+) False LOC120566012
XM_039812207.1 mRNA upstream 32917 9406710 ~ 9451086 (+) False LOC120566012
XM_039812211.1 mRNA upstream 40054 9406710 ~ 9443949 (+) False LOC120566012
XM_039812218.1 mRNA downstream 89293 9575258 ~ 9587669 (+) False depdc1a
XM_039812217.1 mRNA downstream 89471 9575436 ~ 9587669 (+) True depdc1a
XM_039812221.1 mRNA downstream 103191 9589156 ~ 9603575 (+) True LOC120566020
XM_039812222.1 mRNA downstream 128830 9614795 ~ 9671788 (+) True fnbp1l
XM_039811520.1 mRNA downstream 280111 9766076 ~ 9785140 (+) True hps3
TU127064 other upstream 324308 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1229428 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1238182 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1578756 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 2133416 7349810 ~ 7350587 (+) True G93938
TU127128 other downstream 66331 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 86333 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 331656 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 358784 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 358784 9844749 ~ 9845981 (+) False LOC120565620

Expression Profile