RNA id: TU127128


Basic Information

Item Value
RNA id TU127128
length 3959
RNA type TUCP
GC content 0.49
exon number 2
gene id G94239
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9552296 ~ 9557568 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTTGTCTTGCAATCCAGGCTCGGCAGTGTGTCTGAAGTGTGATGGCAGCTTTCCTGATTCGGGTGTAGTCGTTCCTCTCCAACCTGCCGAGCTGCACCGCCCGGACCCTCTGCTGAAGTTTCACAGCAGTCTCACGCTTCCTTTGGAAAAGGCGCCTCTGCACTAAGCATCTCCAGCACGACTGGATCACAATGGCAGCTTCATTTTGTCGGCTTATGTCCCTCCTGACAGACCAGCCCCTAAACGCTGCCTGAAGGGTGATGGCGGATTGCTTCATCTTAAGgaacttttctctctctcgtctTTGAAGAATACAGGCGCGATAGTATCTCTGGTTGATAATGGCAGACAGGCGCATGGCCTTGAACTTGACTTCCTCTCTGTGCTTTCTGAATGCAGACTGGATCACAGTGGCAGCCTGATGCCAACAAGCAACATCCTTTCTGAGCTGCTGGCCTCTGTATGCCGCCTGAACAATGATGGCTGCGCTGCGCATTTCCAGATATCGACTTCTTTGTACTTTAGCTGCAACAGCCGACCGATATTTTCGCTGAATTGTAAGCACGGACAATTTCATTTGCAGATACTGCTTGCGTTCGAAGAAGCCTCTGTAACCTCTCTGGATAACACTGGCGGCATGATGCCTTTGTTTGAGGATTCTTCTGGATTTCATGCCACGGAAAGCAGCTTGGAGTTTAATGACAGCTTCTCTAACGTCCTGATAATGTTTTACCTCAATGTGTTTAAGTCTCTGAGCTCTAAACCTCTGCTGTAAGACACAGGCTGCCCAGCGTTGCTTCCTGAAGGCCGACTGCTGTTTATGCCTCTTGAGGTTTGCTTGGATGACAGTAGCTGCCCTGTGCATACTGGCAATGTTGGCTCGCACACGATGACCTCTGAAAGCTGCCTGGAGAACGATGgcagaatgttttatttttaggaaaTTTTCTCTGTCACATCTCTGAAGAATACAGGCGCGATAGTATCTCTGCATGATAATGGTGGACAGACGCATGGCCTGGAATTTGACTTCCTCTCTGTGCTTTCTGAAAGCAGACTGGATCACGGTGGCAGCCTGATGCCAACGAGCAACCTCCTTTCTGAGCTGCTGGCCTCTGTATGCTGCCTGGAGGACAACAGCAGCACTGCGCATTTTTTGGTATATTTGCATTTGCTCCTTTGCTGCTACAGTGGCCCGATACCTCCTCTGAATGGTGATGACGGAGGATTTCAAAGTCAGATACTGCTTGTGTTCACAGAATGTTCTGTAACCTCTCTGGATAACACTGGCAGCCTGGTGCCTTTGTTTGATTTTCTGCCTTAATTTTATTGCACGATATGCAGCCTGCAACATGCTAGCAGCTTTTCTGCGCTGTTGATAATGTTTTACCTcaatgtttctctgtctctgagctCTAAACCTCTGCTGCAAGACACAGGCTGCCCAGCGTTGCTTCCTGAAGGCCGACTGCTGTTTATGCCTCTTGAGGTTTGCTTGGATGACAGTAGCTGCCCTATGCATACTGGCAACGTTGGCTCGCACACGATGACCTCTGAAAGCTGCTTGAAGAACGATGGCAGAATGTTTAATTTTTAAGAACTTTTCTCTGTCATGTCTCTGAAGAATACAGGCGCGATAGTATCTCTGGATGATAATGGTGGACAGACGCATGGCCTGGAATTTGACTTCCTCTCTGTGCTTTCTGAATGCAGACTGGATCACGGTGGCAGCCTGATGCCAACGAGCAACCTCCTTTCTGAGCTGCTGGCCTCTGTATGCTGCCTGGAGGACAACAGCAGCACTGCGCATTTTTTGGTATTTTTGAATTTGCTCCTTTGCTGCTACAGTGGCCCGATATCTCCTCTGAATGGTGATGACGTAGGATTTCAAAGTCAGATACTGCTTGTGTTCACAGAATGTTCTGTAACCACTCTGGATAACACGGGCAGCCTGATGCCTTTGTTTGATAATTTCACGGGATTTCATTCCTCGGAAGGCAGCCTGTAAGACAACAGCAGCATTTCTCATGGCACGCAGGGTTTGCATCTCCTCTCTCATTTTCTTGTTGCCTCTGTAACGTGCTTGCAAAACACTGGCAGCCCTGTGGAGATCCGTGTAGTAGGTTCTCTGCTGGTACTTTCGGAAGTGAGACTGAATTGTTACAGCTGCTGTGTGCTGGATGCGCAACTGCTTTCTGACCTCACATCCTCTGTAGGCTGCCTGCAGACAAATTACTGCGCTGCGCTTTGACAGATAGTCCAAACGGTCTTTTCTTGCCAGAGTTACTGCTCTGTACCTCTGCTGACAAACCAAAGCTGCTGCCTTGAGAGCTAGGAACCTATTTCTATCCCAAGTGGTGAGAAACTTTCTCTGAATGATTGTAGCAGCTCGGTGCATCTCTACAATCTTCCTCCTGGCGCTGTGGCCACGATATGCTGCCTGGATGACTAAAGCTGCAGATTTCATTGTCCGATAACTCTGCACCTGTTGATCCCTGAGCATTTTGGCCCTGTAGCGTTCCTGAATAACGATGGCAGCACACTTGGTGGCAAGGTAAGCCATACGCATTCTGTGCATCCTGAACTGAGCTTGGATTGCTCTGGCAGAGTTGTGCTTCTTCTTTAGGTCATCTCTCGCTCTAAATCCCCGGTAGACAGCTTGTATCTTTACGGTGGCCTGCTTCAGCTCTCTGTATTCTTTTTGTTGTGCCCTGCAGAGGAGAAGAGCTCTGTATCGGCTTTGGATGATAATCACCGCACTTTGTAGTAAGAAATATTGTTTCCGACATAAAAACATCCTAACTGAAGCCTGAATGACAGTCGCTGCCCAGTGATTTTTCTTCAGCTCCGCCCTAACTCTCATGCCTCTGAATCCAGCTTGGAGTGTAACACAGGCTGCTCTTATGTGCTCATATGCTTTCCTCATCTCTTTTCCTGCAACATAAGCTCTGTAGTGACGCTGTATGACCACAGCGCAGGCCTTCTTGGACCTGTATTCCGCTTGTGCTTTGTGCCGACGGTAGTGAGCCTGTATCAGTGTTGCACACTGGTGTCGCCTCTCTATCCTCTTCCTGTCAGCTCTGCCTCTCCAGTTTGCTTGTATGACAAGTGCAGCATTCCTAAGAGCGTCATAATCCTGCTTTGTCTTAAGGGCCAAATTTCTGGCTCTGTACTTCTGCTGTATCACAGCTGCAGCTTTTCTAAGCACAAGGTAGCGCCTTTGGGCAGCATACTTCCTGAAAGCTGCCTGGATTACCGTTGCTGCCTGGTGCTGTTTTTTAAGAGACTCCCGAGCCACTTTTCCACGATAGGCTGCCTGTATGGTAATGGCAGCGCATTTCATCCTCACAAACATTTGCCTTTCAACGTCTCTTTCCACGGAGGCCCTGAACCTGCGCTGGATTAGGACGGCAGCGCATCTCATCTTTGCCACCCGTTTTCTGACAGCATGCCCTCTGAAGGCACTCTGAATGACAATAGCCGAGTGGTGCTGCAGTTTTAACATCTGAAAGCAGCGCCTCTGTGCATGACCTCTGTACTGGGCTTGAATGAGCACCGTGCTTCTCATGATCTTTCTGTATTGATGGAGACACCTCTGCGTTCTATACCAGGACTGAATCCTCACAGCAGTAGCACTTCTTTTAGCCATTTTTTCCTCGTACCATTTCTTGAACACAGCTTGTATCACTTTGGCAGCACAGTTTTCCTTTTCCGTTTTCTGGGTTTTCCATCTTCTGTACCCCCTTTGTATTTTTACCACTGCTGCTCTAAGGGAGAGATAATGTTCCCGATCTCTTTTTGCCAGAGCCCATGCTCGCAAGTTCTTCTGAATGACAGTTGCCGCCCAATAGATTCTTCCATAAGCAGCGGCTGCCCTCCTCATTCGCCATTGTGCTTGGACAACAATGGCGTAATATCTAAGGCCTTGGTAAGCCCTCATGGCCGAAAACATCCTCC

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127124 lncRNA upstream 605 9547714 ~ 9551691 (+) True G94238
TU127114 lncRNA upstream 8802 9541467 ~ 9543494 (+) False LOC120566011
TU127116 lncRNA upstream 11237 9540537 ~ 9541059 (+) True G94231
XR_005640322.1 lncRNA upstream 56939 9494153 ~ 9495357 (+) False LOC120566016
TU127112 lncRNA upstream 56968 9493981 ~ 9495328 (+) True LOC120566016
TU127153 lncRNA downstream 104564 9662132 ~ 9672803 (+) False G94259
TU127155 lncRNA downstream 115863 9673431 ~ 9679737 (+) True G94259
TU127173 lncRNA downstream 134361 9691929 ~ 9693033 (+) True G94266
TU127336 lncRNA downstream 343627 9901195 ~ 9902122 (+) True G94373
XR_005640304.1 lncRNA downstream 351339 9908907 ~ 9912100 (+) True LOC120565916
XM_039812203.1 mRNA upstream 8761 9384505 ~ 9543535 (+) False LOC120566011
XM_039812202.1 mRNA upstream 8761 9384506 ~ 9543535 (+) False LOC120566011
XM_039812205.1 mRNA upstream 8761 9384506 ~ 9543535 (+) False LOC120566011
XM_039812197.1 mRNA upstream 8761 9384508 ~ 9543535 (+) True LOC120566011
XM_039812201.1 mRNA upstream 8761 9384509 ~ 9543535 (+) False LOC120566011
XM_039812218.1 mRNA downstream 17690 9575258 ~ 9587669 (+) False depdc1a
XM_039812217.1 mRNA downstream 17868 9575436 ~ 9587669 (+) True depdc1a
XM_039812221.1 mRNA downstream 31588 9589156 ~ 9603575 (+) True LOC120566020
XM_039812222.1 mRNA downstream 57227 9614795 ~ 9671788 (+) True fnbp1l
XM_039811520.1 mRNA downstream 208508 9766076 ~ 9785140 (+) True hps3
TU127064 other upstream 392601 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1297721 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1306475 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1647049 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 2201709 7349810 ~ 7350587 (+) True G93938
unassigned_transcript_387 other downstream 14730 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 260053 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 287181 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 287181 9844749 ~ 9845981 (+) False LOC120565620
TU127346 other downstream 344717 9902285 ~ 9903189 (+) True G94376

Expression Profile