RNA id: TU127375


Basic Information

Item Value
RNA id TU127375
length 2949
RNA type TUCP
GC content 0.45
exon number 5
gene id LOC120565490
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9985719 ~ 10159881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTCTCCCCTTGAACACTGAGCAGAAGGCTGGGGCTGAGGGAGGCAGAGTAGAGGGGAAGGCAGCCTGGAGGAGAGGCAGGGACAGGGAGAGCTGAGGCCGGGTTAGGAGCTCCGAGGCTGGGGGTTAGGAGGATGGCGGGCCAGGGTAAAAGTGTGGAGGTGGGAGTGCGACGTGGGCACAGGAATGCGGTTAAGGTGGGAGAAAGGTGAAATACAAGGAGGCCGCGATTAAAGTGCCATAGCTGGGAGAGGAACGAGAGCTAGAGACGAGGGACAAGGTGAGGAGAAAGTGTCacactgaggaggaggagaaggccaGGTAGGGAAGATTAAGTGATGGTGGAAAAGAACTGGGAGTCAACTGAGACTAGGTTGGCTAGGGGTTGAAATATAAATGCATATAAATTATGTACGAGTGAGGAAGCCTGAAGATGTCTAAAGCCAGTTAAGGTATGAGTGCTAGACTATTTTGGAGGTGAGACAGGTAGCAAGGCAACAAGAGACCAACACATGGGCAGAAAAGGAGACAGGAATTTAGTATTCCAGCTTTAGGAGTGGGGAGTCTTTTTTGCTTTTCCTGCCATGGATGTAGTGCTGGTTTGGACAGCGGCTGGCGTCCAATCAGACAACAGGACTGTAGGCCTTGTCATAACGACAACCATGACATCACTGCAAGGGCTAGCGGAAAGAAGACAGCGGAGCTCCAGACAGACAGCGGGGCTTCACGGGGCTGCACGCCGGACAAAGCGAGCCGGCTGCCGGATAGAAACCGCGCGGACTACCGGGGATGGGGGAAACACGCTGAGGGTGCCGGTTGGACGTTTCTCGGCCGGCTTTGGGAGCTCTGTCCCGGACAAGTTGAGGCTTCCTCGGGGAAGCGAGATGAAGATATGGAGGAGGTTGAGCGATATGGCATCTTGTTTAATTTCTGCCAATCAAGACGAAAGGAAGACGACTCCCAAACTGGCATGACGTAACGGGAGAGTGAAGACACGATCAAGGGACCAGAAAATGCATAAACCGGATGGAAAATGGGAACTGAGTAGCAGCGGCTGCTGTAATCTCCGCTGTTCAATTAGCAGCGCTGACCGGGACGCCACCTACACTTCATTAACAGGGAGGGGAAGGTGAAACATCAAGCCAGTAGGAGTACATGAGATGGGGAGTAAATGAGAGCTTGCTGTCAGTAGTGTGAGCCATTTCCAGGTGAAGCAAACTGAATTAAACTGAACTGATCTGAACTGGAATGACCtgaaaactgaactgaactgaaacgAAAGCTTCCTCTGGACAGGACACACGGCTCTCTGAGCTTTCGGAAAAAGAATGTTCATGCAGAGGAAATCCTTGAAATAATACAGACGAAAGCCTGCTGTCATGCATGTTGTGTTGTCTCCTGTTAATTCACATTTACATTATGTTGTATGACATCAATTTGACTTAATTTAATTATGAATTTCAGCTTTCTCTTGTGTGCACATGGTCcgttttatcttatttttttaatttatcatAAACACAAGGCAACTTTTACGTCACTGTCTATtaagtttatttcttttttttttgtgtaactACGTATGTTCATGTATCTATATGAGGGATAATCATGGATTAGTCTTACAGTAATACAGATGCTATAATTGATATTTTAacaatgtgaaaacaatgtTACAATGTGAACGGAGTCTCTTGTTGTGACGAAGCTTCAGAGAAATGTCTCCTGAATCTTCATCACCTCTCAGCTTTATGCTGCATTCACATGGATCCAGGCAGACGGACACCTTTTGGACGACAAGACGAAACACGCATGGCGATACGTTGCTATGGTGATGTATTGTTCACAAAGAATGggataaaatatataaaaatgattTTGTCTATTTAGAAATGCATGTGGTTTCTTGTAACATCAACGGTACAATTAAAGTTCTAATCAGATCAGTGTTACTACAGTGTCTACTAGCTCAGCGTTGTCCAGATAGTGGTTTCTCCTCGTGTGAGGGAGCTACGCAACATCGGgttcttaaaggtccagtgtgtaacgtgtttagttgttcattatcaaaatctgtgttgcccgttcacacacttgtcctttttcatgactatttaccaccgccatcaattccaagtattcctattggctgccatttgcattcacatgaactggggtagacgctccatattcatgcgctatcttgaaatacattagccggtaagggacaaaCAGGACGTACTGCTCCGcttttcgcgttttcgctgtcatataataaactcccaggtgctgctaatgctgctaatgggtatcgtagcttcccggccccggcaaacatggaggaccacacgtattctaAATTCTttttcgcccagaaaaagaaaaaggatattgaaaagagcaagagaccggcgtcatcagaaaaaagcgtgaaggctaccgtagctgtaatatgtACTTTGAACTGTGTGGCGTGAGAGAGTTGATtacgatatatgatctcaacgccaGATGGGTGAAATtgccacacattggacctttaattcCATCACGGAGGATGGCAAACAGTTAAATATTTTAACTTTGGACAGCAATGCCATCGACTGTTACCAGTATTCTCTGCCGGCCTCAATTACTTTTACCGCCCTACTCTCGTTCACAAGCAATTGTTTGCTAACATAACTTAAAAGTTGATAATATCAATGTTGTGTTTCCGCTGcctccaagtggccaaaaaaaaccATTTATTGCAGGTTTTAATAAATACAGTTAAagttaagtaaataaataaagttaaagtAGTCTAACACAGTGGGTTTTCTCACACAGGGTTTCCcacgagtctttctaaaaagctgaaacatgtttctgaggcTTAGAAATATAGCCCCTTGACATTTTATACACATGTAATAAAGATTAGATGCCTGCAGTTAAAGCCTTAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127377 lncRNA upstream 90362 9981422 ~ 9983844 (+) True G94400
XR_005640304.1 lncRNA upstream 162106 9908907 ~ 9912100 (+) True LOC120565916
TU127336 lncRNA upstream 172084 9901195 ~ 9902122 (+) True G94373
TU127173 lncRNA upstream 381173 9691929 ~ 9693033 (+) True G94266
TU127155 lncRNA upstream 394469 9673431 ~ 9679737 (+) True G94259
TU127383 lncRNA downstream 23387 10183194 ~ 10183408 (+) True G94405
XR_005640263.1 lncRNA downstream 44333 10204140 ~ 10297258 (+) True LOC120565491
TU127376 lncRNA downstream 136942 10296749 ~ 10297122 (+) False LOC120565491
TU127406 lncRNA downstream 179429 10339236 ~ 10405233 (+) True G94426
TU127407 lncRNA downstream 186390 10346197 ~ 10358788 (+) True G94427
XM_039811649.1 mRNA upstream 94464 9967354 ~ 9979742 (+) True fxr1
XM_039811652.1 mRNA upstream 94464 9967354 ~ 9979742 (+) False fxr1
XM_039811653.1 mRNA upstream 94464 9967354 ~ 9979742 (+) False fxr1
XM_039811650.1 mRNA upstream 94464 9967354 ~ 9979742 (+) False fxr1
XM_039811654.1 mRNA upstream 94464 9967354 ~ 9979742 (+) False fxr1
XM_039811525.1 mRNA downstream 203655 10363462 ~ 10414826 (+) True atp11b
XM_039812410.1 mRNA downstream 280751 10440558 ~ 10450982 (+) True kng1
XM_039812412.1 mRNA downstream 280751 10440558 ~ 10450982 (+) False kng1
XM_039812413.1 mRNA downstream 280777 10440584 ~ 10450982 (+) False kng1
XM_039812411.1 mRNA downstream 280778 10440585 ~ 10450982 (+) False kng1
TU127361 other upstream 125976 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 171017 9902285 ~ 9903189 (+) True G94376
TU127191 other upstream 195008 9817621 ~ 9879198 (+) True G94281
TU127196 other upstream 228225 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 228402 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 757118 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 787169 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 1088768 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 1269224 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2845769 13005576 ~ 13100445 (+) True raver2

Expression Profile