RNA id: TU127376


Basic Information

Item Value
RNA id TU127376
length 374
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id LOC120565491
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10204140 ~ 10297258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCGGCGAGCAGATTCCTCTGAGCTAGCCATTATCTCAGGGAGGAAGTTAATTAAAGTGGCCCAGTCTGAATCAATGGGGGAATTTGCTGCCGCGCGACGGACAGACCGACGGACTGACAGGAAGAGCGGAGTGACGGCCATGACACCACTTCAGAAGAGAAGATTAGCCCAGAGACAAAACTCTCGGCTCTGATCAGCCCTACAGTGTGGCTCTCCTCCTGGATTACTCCTCTCccacccctccctctcctcctttctttttctatctctccctcgctatccatccatccacgcCTCCCCCATCCTCCATCCCCGAAAGAACTTCAGGGGGCTTGTCTTCAAAGCTCGTCCCCTCCTTCCATCCCTGTAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127383 lncRNA upstream 113341 10183194 ~ 10183408 (+) True G94405
XR_005640261.1 lncRNA upstream 136868 9985719 ~ 10159881 (+) False LOC120565490
TU127406 lncRNA downstream 42114 10339236 ~ 10405233 (+) True G94426
TU127407 lncRNA downstream 49075 10346197 ~ 10358788 (+) True G94427
TU127411 lncRNA downstream 112401 10409523 ~ 10413761 (+) False atp11b
TU127434 lncRNA downstream 210530 10507652 ~ 10509538 (+) True G94450
TU127515 lncRNA downstream 233574 10530696 ~ 10531381 (+) True G94515
XM_039811316.1 mRNA upstream 181427 10112982 ~ 10115322 (+) True sox2
XM_039811654.1 mRNA upstream 317007 9967354 ~ 9979742 (+) False fxr1
XM_039811525.1 mRNA downstream 66340 10363462 ~ 10414826 (+) True atp11b
XM_039812410.1 mRNA downstream 143436 10440558 ~ 10450982 (+) True kng1
XM_039812412.1 mRNA downstream 143436 10440558 ~ 10450982 (+) False kng1
XM_039812413.1 mRNA downstream 143462 10440584 ~ 10450982 (+) False kng1
XM_039812411.1 mRNA downstream 143463 10440585 ~ 10450982 (+) False kng1
TU127375 other upstream 136942 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 348519 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 393560 9902285 ~ 9903189 (+) True G94376
TU127196 other upstream 450768 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 450945 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 619803 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 649854 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 951453 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 1131909 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2708454 13005576 ~ 13100445 (+) True raver2

Expression Profile