RNA id: TU127407


Basic Information

Item Value
RNA id TU127407
length 333
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G94427
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10346197 ~ 10358788 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGAAACTATCGTGGCAGCAGAGATATAAGTGTAGCTCGCTGGGACTCCGTGGCCAGCCGTCTGTCATTACCGCGAAATGGGAAAGAccggatttatttttttgcacagTTGCACTGCATGAATGCGTCGCGTAATGCGACCGAGATGAGCTGCCTTTGGGAGGAAATATTCATGGTTCGGGACGGTTTTGTTGGAGTAGCTTGTTGCTAGCTCtgtgctagctaacgttacttcgTAACGTATTTGTTAAGGATGCTACGGTGGATACGACAACAGCTGGGCTTTGACCCCCCTCATCAGAGTGACACCAGGACGGTTTATGTAGCAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640263.1 lncRNA upstream 48939 10204140 ~ 10297258 (+) True LOC120565491
TU127376 lncRNA upstream 49075 10296749 ~ 10297122 (+) False LOC120565491
TU127383 lncRNA upstream 162789 10183194 ~ 10183408 (+) True G94405
XR_005640260.1 lncRNA upstream 186316 9985853 ~ 10159881 (+) False LOC120565490
TU127411 lncRNA downstream 50735 10409523 ~ 10413761 (+) False atp11b
TU127434 lncRNA downstream 148864 10507652 ~ 10509538 (+) True G94450
TU127515 lncRNA downstream 171908 10530696 ~ 10531381 (+) True G94515
TU127597 lncRNA downstream 352415 10711203 ~ 10711496 (+) True G94587
TU127612 lncRNA downstream 558137 10916925 ~ 10940007 (+) False G94598
XM_039811316.1 mRNA upstream 230875 10112982 ~ 10115322 (+) True sox2
XM_039811654.1 mRNA upstream 366455 9967354 ~ 9979742 (+) False fxr1
XM_039811525.1 mRNA downstream 4674 10363462 ~ 10414826 (+) True atp11b
XM_039812410.1 mRNA downstream 81770 10440558 ~ 10450982 (+) True kng1
XM_039812412.1 mRNA downstream 81770 10440558 ~ 10450982 (+) False kng1
XM_039812413.1 mRNA downstream 81796 10440584 ~ 10450982 (+) False kng1
XM_039812411.1 mRNA downstream 81797 10440585 ~ 10450982 (+) False kng1
TU127375 other upstream 186390 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 397967 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 443008 9902285 ~ 9903189 (+) True G94376
TU127196 other upstream 500216 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 500393 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 558137 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 588188 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 889787 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 1070243 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2646788 13005576 ~ 13100445 (+) True raver2

Expression Profile