RNA id: TU127624


Basic Information

Item Value
RNA id TU127624
length 7232
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G94609
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10963548 ~ 10977065 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGGCTACTGACTGCTGTttgagtacttttatttttgatcTTTTAGTTTATTCAAGttaaatgatctgaatacttaCTCCAAAACTACTTATTCCATAATTTGTCTTTGCCAAAAGGTCTCATATCTTTTCTAACAGACATTCCTGTCACAAAAGATATTCAAAGCCACCCGACTTTCAAAAATTCCCCTAACTTTCATGCTCAGAAGCAGAGTCATAgatcaaaatgaaacaaatgaaTCTCCTCAACAAATACGGAGTGTGTAGTTGTAGCAAGTAGCTGCTTCATATCAAATTACTTTCAGGAGAgttataatacaaaataaacaggGTTACTACAGACAGAACACCTTTATTGGGTACACAGCTTCAAAATGTTCTGTCCCTTTCTGCAAACTATTATATAAGTATCTGCCAAATGGAAGCTGTAGGATATGAGGATATGTTAtgataataaaatatttctgcAGACATCTGGTCAAACACAGGAAGGCTGCTAATCATAAAAAGCTTTAATTGCTCTGATTGTTCCTTTGTGTTCATACTCTGGTAGTTGGCCAACAACAGACATCAGGCCACCAGAGCACGGGCAATTGGAATAAAAAATAGTTGGTGTACAAGGAATGAAGGCAACAACATCAgctaatatacagtatctggTGCTAAAACCTCAAAATGAAATTATGGATGATTATGATACAATGCAATTTTAAAACATGACCCCAGGTGGACCCCTCCAATGGTTACAGCTGGGAAGAGTAATTACAATTCATCGCATTgtcatgaacgggttcgtatgatattgtACAAAACGTTATGCACACTAAAACTTATGATATCATACGGAAACTAGGAAACCGCCGGCTGGTCATGTGACATCGGCAacagagctccgtgctacagagcgacAGTTGCTAGCTGTTAAAGCCGCTACAAGGCTTTGTGACACCGGCtccagacctccgtcacagctcgtcagcagcagttagtagatgtatttagccgctacagaacTCTGTGACACCGGCTAcggtgctccgcatggtgctccgcatggtgctccgcatggtgctccgtcaggtcagtgGTAggtggtggttcagttacccgagaataggtgactgtgcagcaggtacagagcaccgcgagctgccagtcgttggtggttcagttacccgagaatattttctgggccctgtagaaaggcctTTTCTATGGGCctctccccgcatccacagctattcattctaccatctttttgggcccttctcacatgagggccctgggtactgaGTCCCCTTTTTcgccccagtccgacgcccctggcagcgtgtacagagcaccgcgagccaTTTCGGCGGGGATTACGGTTAAAACTATAGTGCAcaatagtgcgtagtttctgccacccccatgaggaattgtaaataatgacaacaaaactgtcagtgtgtccacatgacacaagccttccatgactgTGCACCGCCCCCCCCCCGATCgtggtttgtattaaaacactcccaaggaacacgcatttcctaTTTAAGTCAGGTTTTTGCTGCTCCAACATTCACAAGGCAGCGTGACAGAGTGAGGATGACACAGAGGTGAAAGACCTGATAGATGACTGATATGTCAGGACGCTGCTACTTTCCCTTCTCAACCTTCAGCACCTAACATCAGCTGACCTGAGAATCTGCTGTCGAATCTGACTTTCTGTCTAAAATCGTAAACTTATGAGCTGTGTCACACTATGCACTGCAAATAGTgcaaataatctttttttctgcttgttaACAGCAGATCTTGCTGCCCCTCACAAGTTTCACACCGAAGCTCTTTTTAATTGTCACGTACAGCAGGCTCTGTGTGCATTCCAAAGCACCTATAAAGACAATTTATGTATCTTATATAAGATATTTACGTTTACTCTTCACATCCTGTGGTTGATTTCTTGCCCAGTTTGAATTATCTATGACCTCCTTCCACTCTGTAGTTAACAGCAGGAAATTACCTCTGATTACTAGATTATGGCTACTTGACACCAAGCACCGGATGAACTCAAGGAGAGTGATACTGTCAACTTTGGACCCGATGCATTTGAATGAGGTTAGACATAAGCTGAAAGTGAGATCTGTGAAGATGATTATGGATTGACATATTTGACCTCagagattcatattttgtagaATTAAGGAGATTTTTCTCAAAACATCTAAAACATATTCAAACAGGCAGTAGTATATGCCTCTCAAAATATGTCCTTCATATAATGTTTGCCTTTTATTTATCTCTCTGTATCCTTTTCCCTTCAATTTATTACTTGTTTAATCTCTATGGCTGGGAACACGTTTGTACTAATTTTTGTAATTTCTGAATTATTTCCTAATCATTTCTCCAAAGTTTCCTAGATAGAACTGTGTAAGTTGGTACTAGTTATTAAGAAAATAGAGAAAGTGTTCACTTGGTACACTTTGGATTTAAATGTGCAAGTGTAACCCAGAGTCTTTAACTGGACATGTCAAGCTGTACATGCAAAAATATATTTCCCTGTCCGATTCAACATATAATACAGTTTTCAATGAcaaatgaataatgaatgaataCTTACTTTGGTGTgaatggtacttttatttcaagAACATTCCTATTTTCTTCATAATTAATACCAAATAGTAGAGTTCTTTCCAGGACACCCATTAACTGCAATTGATACGTTTGACTGAATTTGATGCGCTGCAATTGATACGTCGTGTTCATGAAAAACTAAGTATTGaatgttttttactttttaagtagaaaacaaatgaaactATTTCATTCCACTAGCATTTAGTTTTTTAGTGAGATTCAGTACAGCACATGCCCAACATGAGGTCTTCTTTTTCACTTAATGGCTGTAAGGTGTGACCTCTTTCACACAAACTGAACAACACACTGTTGGCTCTGCAGCTGCACAGACACTAACTGATTAACTAGAGCAATTGTGAGTGAGAGTTAGgtatgagggagagagagagtttttgtGTGGGTAAAAACATAAGGATACAGACTTTTGAAAATCTGACACTTGTTGGCCCAGTGTTTATGAGGCTGTTTAAACAGAGTGTACACAGAATTAGTGTTGCTTTTAAGGTTGTGAAAGGCTATTGACCTCTAGTGGCTGAGGATTTTCCGAAAGTGAATACAAATATCAAGCTTAGAAAAACTGACAGATCATTCTTAGAATCAAAACaatatgttcatgttttacCATGGTTGTAGTTCCACTGGGCCGTGCTGCAGGTTCGGCTCCAGGAATGGAGATGTCGTCTAATTGGTCTACCATTGTGGTCCAGGCAGACATATCAAAATATCAGATGGATTTCCAAGAAATTTAGTACAGGCATTCATGTTCCGTAACTTTGGTGAtgctctgacttttcctctatgccaccatcaggtcaacatatgtttgtccaatactttggtttatgaccaaattccTGCaccctcagctgtactttgtgttgaGTGCTAATCAATTAGCAAATGTAAGCATGCTACTCTAAGACATTGAACATCATTAGAGTCAGCAGATGCTTCACCTTCCCAGCCAAGAAGCTGGGTGTGCTCTGCTCAACGGAACCACATTAGACATTAATAGAGACCACTACAAACCTGCATTAGAAGTTAAAGTGGAGgaaaatatattcatatttacagTTATTATATCATAGtcacattcatacacattccacaacacaaaacagaatAAGCATCTCCCGTCATCGGTCGAGGGATTTCAGTAAATCTTAAtaaagacttttatttttttttgtaccaaAATAGGCAGTTAGAGCAGggataaatattataatatgttAGATATAGATCCATCTCTGTAATAGATTCTTTGCATCGGTGCTTTACTCTAACAGACAGTGACATGGTCCCCTGGCTAAAACACACAGCCAGAGTCACACAGAGAATCCAGTTCTGTCAACTGACAACACCACTGGTTTACTGGAGTGATAGAGGATTATAGATGGAAATAATTCATTTAACTGGACATTCTGTGAAGAAATATTAAAGCTTTTAACACACACATGTGGTCGCAACTATCTATTATTTGGGTCAAAGAGCTACTTTGTTGACAGAACTGTATTTCTGTACGTCTCAGTTTGGAGGAGTCGCCCTGGGGGGTTGAGGGTGGAGATGGGAAGTGGGTGGCCGGTCCATACACGGGCTGTGTTACCAAAAGCATCTCGGTATTTCAAATGTTACGCTTAACCGCGGAGGTTATTGTCATGTTTCAGGTAAGCCCCATTTGTGacttcactctcttttagcCACCGACTCCAGAGGGAAATATCTGACTCTTTAGCTGCtcaatgctccactatgttcaccagctagatGTCAAccgtctgtctgctgtttggtgctgagcaggtagtgtacattGAGTTTTTAGAACCATTTCGctaaaaacagctgcctgcagcAACCAAAACGAGTGCTGTAAGAGTGAACCAAAGCAGTAAAGTTGCAGCcggacagctaaacaatgaTCTGAAACTCACTGTAAAGCCGATGAGAGCTGCAGATTCAGCTGATAATTCTCTTTGTCACATTGTTTTCATGTTGTCATTTGATAcatagttataaaaatatttattatagtaGCATTAAGAGAAAAGCCAAATTGTAATGTGTTTACCTGTTACCTAGCAGAGGGTTGCGCCTTCAAAGGTATTTTTGTGACGTCACGGATGTCTACTATCTGCCCGGAAAGAAATGCTTGAGGCTAAACCAAAATGTAAATGGTTTATTTCCATAGACTGTGACACTCTGATCCTGCCACCAACTGTCTATCTAGATGTGAATTATGTTGCCCCTGGTTATACTCATGCTCATGCATGATACAAACAAACCAGGGATCCACTTATAAAAACACTGCTCCTAGCACTATTTAGGCTACTCAAACTATTTAGCACAACATGTAAATTAAACTGATAAAAAAGATTAGGACAATAAAAACAACTGCAGTGCTCTAAAAGATGAAGAGAAGCTAGGTTTCAGCGCATACTgagatttattttgttaaatttgCATGTTGTGGCGCTTATATAAAGCAGGAAACTTCAAAATCAGAAATTGGATCTGTCTGGGCAGACTGTAGACATCTGTGCGATCATGAAAACACCTTTGATGATACAACCCATTAAGGGCTCAAAATATAACCCATTGATTGTTCACCATGTGCCTGTATCATGGAGCACTGGTCACAAATGGAGCTAGTTTCAGGTGTTGTAAAtccagcatgaaaaaaaaaaacctgttgcAAAAATAGCTAATGCAGTTGATCAGTGGGCTATGACAGTATCGTTAACCAGAGGAGTTCACCTGATGTCTTCAACCACGCAACAATAGCATGACATACAGCAAGTGACTATAAAGAGTTCCCTGACCTCGTTAGCTCTTTCAAACCAGCATAATAACCACTGATGGCTGAAAGTACAGTGAGTGTATCACACGTCCAAACACCAGAAACACAGAGATGGGATCAGATTTTAAGAAACCAGCCCCCACTTGTGCAACTGCATTAAATAGGAAAGCTATGACGCAGATGCTGATAATTATGATCGTGATGATAGtgttgatgaagaagaagatacACTGTTTAATGCTGGAGTGCTCAACTAATGTCACACTATGACtgtggagaaggagagagatgaaagcatgagatggagaggaggaagaggaggagaagggttGGCAGAGATTTGGGTaatataagtttttttttttttttaacagaggaTCTGGGCCTGTATTTATCAAACTGCTTGAATTAAAAGATTGGACTTAAAATGTCTTACTTTTACCctcttaaatgttttttggaAGAATTGTACAACATATTATTAGTCACGATGGGCAATACTTCAGCTATAAGCAATATGTTTAGttctaataaaaaaatgtttacactattatttgcatgtttttatttgaacatttaataggattactgcactactttttcttctctttgctTCTTGTGTTTATAAGGGTGCAAACAACAAGAATAAAGCCGTCATTGATTTTGTTTGCAATCACTTTCCATGCATCTTCATTACCCGCACCTCAATATCTGTTTTCTCTGGCATACCTCGTCTACCAACAGCAAAGCTTCTTTCCTGCTCCAGTTTCCATTTTAGcccattatttcatccatatttgtacatgtatttcattataaatatatacgaTTGTTTTAAATTTCACATGCTAATTGCTACTGGTGATATTAAAGATTTCACACAAATAAAATTAAGGTTCTTAAGTATAATGTTCAGAAACGTGATAAATACAGGCCCAGGGCTCCAAATGGACTATGAGGCCTTTTTACTTAATTTTTTGTTGaagaaaaatagttttttttcatcttgCCTTTTAGGGCTTTAGTGTCATACTTACAGTATCTATTTTAAAGTTCAAAATCTAATTTACAAGAAATATCAAGAGTCTCAATCAAAGAAATCCTAAACTGCTCATTAGGATTTATTGTTACGTCTATTGTACTATAGGTTTATTTTGGCTCTTGGTACCAAAATGCTGGGGCACGTTATCAAGTTTTTTCCCTCATATCTAAAGTCTGTAGTCTAAAGGAGAAAGCAGGAGGAAATGATGGGATATGagagaaagatagaaaaaagACTAAACAGTAGCAATGCCATgaggaaaaacagacagactggAAAGGAGATCAAGATTTTGTCCCAAAAACATGCTCTTAAAGCTACAGCGTGCAAAAGTCTGCCTCTTGGTGACAATATTATCATTACAAACCCATACATGAATGCATTACCCTTTGTTAATATGAAAACAACAACGACAACAACAATAAGAAGAACAATAATGAAATCAAATTAGATAATGGGTACATGTCGCCTTGATTTGAACCCCCTCCTTAAACATTAAGGAACTGAGCTGTAGGAAGATCTACCAATAGGCTGCTGGACAGACATTAGCCTCTCCCACTTCAGGAAGTAGCAGTCCCAGATAGTCCCAGCCTCGTCCATCTTTATGTgcttgtgtaaatgtgtgtgtttgtgtgtagtgatgtgtgtgtacgagagagagagagagagagagagagagagagagagagagagagagacagagagagagagagagagagagagagagagagagaaagagagagaaagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127618 lncRNA upstream 14726 10948503 ~ 10948822 (+) True G94604
TU127612 lncRNA upstream 23541 10916925 ~ 10940007 (+) False G94598
TU127597 lncRNA upstream 252052 10711203 ~ 10711496 (+) True G94587
TU127515 lncRNA upstream 432167 10530696 ~ 10531381 (+) True G94515
TU127434 lncRNA upstream 454010 10507652 ~ 10509538 (+) True G94450
TU127628 lncRNA downstream 19412 10996477 ~ 10997201 (+) True G94613
TU127708 lncRNA downstream 124263 11101328 ~ 11101569 (+) True G94674
TU127710 lncRNA downstream 125411 11102476 ~ 11102815 (+) True G94676
TU127711 lncRNA downstream 127156 11104221 ~ 11104522 (+) True G94677
TU127720 lncRNA downstream 137333 11114398 ~ 11114677 (+) True G94680
XM_039811575.1 mRNA upstream 15232 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039812278.1 mRNA upstream 203619 10748929 ~ 10759929 (+) True LOC120566056
XM_039812279.1 mRNA upstream 229587 10722915 ~ 10733961 (+) True LOC120566058
XM_039812280.1 mRNA upstream 232243 10722902 ~ 10731305 (+) False LOC120566058
XM_039812277.1 mRNA upstream 248666 10696023 ~ 10714882 (+) True tm4sf18
XM_039811350.1 mRNA downstream 128076 11105141 ~ 11107198 (+) True LOC120565506
XM_039811528.1 mRNA downstream 245457 11222522 ~ 11237901 (+) True ccdc17
XM_039811329.1 mRNA downstream 271369 11248434 ~ 11304093 (+) True LOC120565497
XM_039812317.1 mRNA downstream 334673 11311738 ~ 11356871 (+) True LOC120566075
XM_039812048.1 mRNA downstream 382625 11359690 ~ 11458146 (+) True LOC120565923
TU127615 other upstream 15302 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 22304 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 803741 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 1015318 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 1060359 9902285 ~ 9903189 (+) True G94376
unassigned_transcript_388 other downstream 271510 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 451966 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2028511 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 2195960 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 2402333 13379398 ~ 13382744 (+) True LOC120564964

Expression Profile