RNA id: TU127722


Basic Information

Item Value
RNA id TU127722
length 242
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G94682
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11116899 ~ 11117140 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTCCGTAGGTCTCAGTACTGTAGCTTCTGGCAGACAGCGGGCGGCGCTGAGTCAGGCTCTTGGTCGGATAACCAATCATGGGTTTCTTCTGTTCCTGGTAGCTGGGGTATTCGTCATCGTAGCGACCGTTTCTCTTGTTGTGCATCATCTGGCTCTGGCTGTCGGCCATGTTGGTGAGAGCAGAGTGCTCCATGGGGGTGGAGTAGGCCAGAGCCCGACCATAAAGAGGGGGGTCTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127721 lncRNA upstream 868 11115704 ~ 11116031 (+) True G94681
TU127720 lncRNA upstream 2222 11114398 ~ 11114677 (+) True G94680
TU127711 lncRNA upstream 12377 11104221 ~ 11104522 (+) True G94677
TU127710 lncRNA upstream 14084 11102476 ~ 11102815 (+) True G94676
TU127708 lncRNA upstream 15330 11101328 ~ 11101569 (+) True G94674
TU127723 lncRNA downstream 191 11117331 ~ 11117684 (+) True G94683
TU127724 lncRNA downstream 1138 11118278 ~ 11118503 (+) True G94684
TU127725 lncRNA downstream 1490 11118630 ~ 11118841 (+) True G94685
TU127726 lncRNA downstream 2250 11119390 ~ 11119881 (+) True G94686
TU127727 lncRNA downstream 4329 11121469 ~ 11121684 (+) True G94687
XM_039811350.1 mRNA upstream 9701 11105141 ~ 11107198 (+) True LOC120565506
XM_039811575.1 mRNA upstream 168583 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039812278.1 mRNA upstream 356970 10748929 ~ 10759929 (+) True LOC120566056
XM_039812279.1 mRNA upstream 382938 10722915 ~ 10733961 (+) True LOC120566058
XM_039812280.1 mRNA upstream 385594 10722902 ~ 10731305 (+) False LOC120566058
XM_039811528.1 mRNA downstream 105382 11222522 ~ 11237901 (+) True ccdc17
XM_039811329.1 mRNA downstream 131294 11248434 ~ 11304093 (+) True LOC120565497
XM_039812317.1 mRNA downstream 194598 11311738 ~ 11356871 (+) True LOC120566075
XM_039812048.1 mRNA downstream 242550 11359690 ~ 11458146 (+) True LOC120565923
XM_039810317.1 mRNA downstream 356216 11473356 ~ 11490038 (+) False LOC120565022
TU127615 other upstream 168653 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 175655 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 957092 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 1168669 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 1213710 9902285 ~ 9903189 (+) True G94376
unassigned_transcript_388 other downstream 131435 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 311891 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 1888436 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 2055885 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 2262258 13379398 ~ 13382744 (+) True LOC120564964

Expression Profile