RNA id: TU127724


Basic Information

Item Value
RNA id TU127724
length 226
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G94684
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11118278 ~ 11118503 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGTTGTAGTTGTGGTCGAAGTGGTAGGCCTTATGTGGGATGGCAGGTTTTTGGTTCTGTCCCGACTGGTTCTGGTTGCTGCCTCCGTGTCCTGGGAACATCAGCTCATCATCCAACATGGGGACAGACTGTGACCGTGACATGTTGGTCTGCTCCATAGAACCGGGCAAATCTTGACGGTCCAAACTAGTCTGTTGCTCAATGGATGAACTGTAGGTGTCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127723 lncRNA upstream 594 11117331 ~ 11117684 (+) True G94683
TU127722 lncRNA upstream 1138 11116899 ~ 11117140 (+) True G94682
TU127721 lncRNA upstream 2247 11115704 ~ 11116031 (+) True G94681
TU127720 lncRNA upstream 3601 11114398 ~ 11114677 (+) True G94680
TU127711 lncRNA upstream 13756 11104221 ~ 11104522 (+) True G94677
TU127725 lncRNA downstream 127 11118630 ~ 11118841 (+) True G94685
TU127726 lncRNA downstream 887 11119390 ~ 11119881 (+) True G94686
TU127727 lncRNA downstream 2966 11121469 ~ 11121684 (+) True G94687
TU127728 lncRNA downstream 8253 11126756 ~ 11127020 (+) True G94688
TU127730 lncRNA downstream 57501 11176004 ~ 11176217 (+) True G94690
XM_039811350.1 mRNA upstream 11080 11105141 ~ 11107198 (+) True LOC120565506
XM_039811575.1 mRNA upstream 169962 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039812278.1 mRNA upstream 358349 10748929 ~ 10759929 (+) True LOC120566056
XM_039812279.1 mRNA upstream 384317 10722915 ~ 10733961 (+) True LOC120566058
XM_039812280.1 mRNA upstream 386973 10722902 ~ 10731305 (+) False LOC120566058
XM_039811528.1 mRNA downstream 104019 11222522 ~ 11237901 (+) True ccdc17
XM_039811329.1 mRNA downstream 129931 11248434 ~ 11304093 (+) True LOC120565497
XM_039812317.1 mRNA downstream 193235 11311738 ~ 11356871 (+) True LOC120566075
XM_039812048.1 mRNA downstream 241187 11359690 ~ 11458146 (+) True LOC120565923
XM_039810317.1 mRNA downstream 354853 11473356 ~ 11490038 (+) False LOC120565022
TU127615 other upstream 170032 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 177034 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 958471 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 1170048 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 1215089 9902285 ~ 9903189 (+) True G94376
unassigned_transcript_388 other downstream 130072 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 310528 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 1887073 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 2054522 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 2260895 13379398 ~ 13382744 (+) True LOC120564964