RNA id: TU127725


Basic Information

Item Value
RNA id TU127725
length 212
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G94685
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11118630 ~ 11118841 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAGCCCATGTCAATCTCATCGATGCTCTGTGACTTCTTAAACTTAGATCTTGTCTCCCTCATCATGGGGGACAGGCGGTCTGAGCTTTTACTCATCACCACGGTCACCTTGTTGCCGCCGCTGACACTTAGCTGATCCTTCCTGTTCTGCTCCCCCTGATTGTCGTGGTACGTCCAGCTGCCGGGCAAAGGGCCTGGGCCTTGTTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127724 lncRNA upstream 127 11118278 ~ 11118503 (+) True G94684
TU127723 lncRNA upstream 946 11117331 ~ 11117684 (+) True G94683
TU127722 lncRNA upstream 1490 11116899 ~ 11117140 (+) True G94682
TU127721 lncRNA upstream 2599 11115704 ~ 11116031 (+) True G94681
TU127720 lncRNA upstream 3953 11114398 ~ 11114677 (+) True G94680
TU127726 lncRNA downstream 549 11119390 ~ 11119881 (+) True G94686
TU127727 lncRNA downstream 2628 11121469 ~ 11121684 (+) True G94687
TU127728 lncRNA downstream 7915 11126756 ~ 11127020 (+) True G94688
TU127730 lncRNA downstream 57163 11176004 ~ 11176217 (+) True G94690
TU127731 lncRNA downstream 75806 11194647 ~ 11194930 (+) True G94691
XM_039811350.1 mRNA upstream 11432 11105141 ~ 11107198 (+) True LOC120565506
XM_039811575.1 mRNA upstream 170314 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039812278.1 mRNA upstream 358701 10748929 ~ 10759929 (+) True LOC120566056
XM_039812279.1 mRNA upstream 384669 10722915 ~ 10733961 (+) True LOC120566058
XM_039812280.1 mRNA upstream 387325 10722902 ~ 10731305 (+) False LOC120566058
XM_039811528.1 mRNA downstream 103681 11222522 ~ 11237901 (+) True ccdc17
XM_039811329.1 mRNA downstream 129593 11248434 ~ 11304093 (+) True LOC120565497
XM_039812317.1 mRNA downstream 192897 11311738 ~ 11356871 (+) True LOC120566075
XM_039812048.1 mRNA downstream 240849 11359690 ~ 11458146 (+) True LOC120565923
XM_039810317.1 mRNA downstream 354515 11473356 ~ 11490038 (+) False LOC120565022
TU127615 other upstream 170384 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 177386 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 958823 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 1170400 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 1215441 9902285 ~ 9903189 (+) True G94376
unassigned_transcript_388 other downstream 129734 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 310190 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 1886735 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 2054184 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 2260557 13379398 ~ 13382744 (+) True LOC120564964