RNA id: TU128289


Basic Information

Item Value
RNA id TU128289
length 452
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G95114
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13399830 ~ 13400932 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttggTGTCAAACAATGTGTCTTGCTCTTGACCACtggatacatacatatttatCATCATGTCTTTTTCAAGCGGAAATTCAGTCTTCTGGGTTTGAAAAGATATTTTAGTATATTAAAAGTCCCAAGATTTGCAGGTTTTTACAATccttgtattttcttttctgttaaAAACTGCTTCCTGAATGATGAACCCTTCACCAGAACAATGAAGCTGGGAGTGCCTGCCTTGACAAAAAAACCTTTTATGCTGCAACACTTTTAAAAGCGACATCTCTGGGTTTACTTGGTAGAATGTCTCCTTCTCCTCATCTTCAAAGTACAGCTAGAACATGGAGAAGGGTCAAATGAGGTTATTaggattaaaaatgtattatcatTTGATCTGATTCATgctacatttttataaaactgGCCTTTTTGGTAATAAAATATACCTCTCGTCTGACTGCT

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128288 lncRNA upstream 213 13390823 ~ 13399617 (+) False LOC120564965
TU128278 lncRNA upstream 24162 13372444 ~ 13375668 (+) True LOC120564967
XR_005640173.1 lncRNA upstream 25482 13372473 ~ 13374348 (+) False LOC120564967
TU128265 lncRNA upstream 57732 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA upstream 57732 13335734 ~ 13342098 (+) False LOC120565776
TU128315 lncRNA downstream 86104 13487036 ~ 13487366 (+) True G95139
TU128338 lncRNA downstream 109261 13510193 ~ 13514065 (+) True G95148
XR_005640289.1 lncRNA downstream 303435 13704367 ~ 13747072 (+) True LOC120565805
TU128368 lncRNA downstream 421921 13822853 ~ 13825269 (+) True G95173
TU128371 lncRNA downstream 421921 13822853 ~ 13824088 (+) False G95173
XM_039810238.1 mRNA upstream 86 13390829 ~ 13399744 (+) True LOC120564965
XM_039810237.1 mRNA upstream 17083 13379398 ~ 13382747 (+) False LOC120564964
XM_039812047.1 mRNA upstream 30823 13367294 ~ 13369007 (+) True LOC120565922
XM_039812029.1 mRNA upstream 40705 13356372 ~ 13359125 (+) True LOC120565910
XM_039811793.1 mRNA upstream 57879 13335770 ~ 13341951 (+) True LOC120565776
XM_039810412.1 mRNA downstream 12429 13413361 ~ 13415999 (+) True insl5a
XM_039811498.1 mRNA downstream 395162 13796094 ~ 13820008 (+) True swt1
XM_039811496.1 mRNA downstream 395281 13796213 ~ 13820008 (+) False swt1
XM_039811693.1 mRNA downstream 456102 13857034 ~ 13947979 (+) True hmcn1
XM_039811906.1 mRNA downstream 594563 13995495 ~ 13999954 (+) True ptgs2b
XR_005640172.1 other upstream 17086 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 179458 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 299385 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1955297 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2151183 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 1218426 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1409436 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1409436 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2919562 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 4454705 17855637 ~ 17859152 (+) False nppc

Expression Profile