RNA id: TU128475


Basic Information

Item Value
RNA id TU128475
length 2209
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G95239
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13968931 ~ 13971139 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGTGCTTTGCCATTTATAATACAAATAGTTAATGATCACATGAAGTATTTATGTGCACGTCTTGATTCCCTAAAACTGACCGTTAAGCATCTGAAACATTTGTAAACATTGTCAAAGATCATAAAAATGCAAAATGACAAtaatataagaaaataaaattgcTACGGCTCGTGTATGCTGTCTAAATTAGGCTAAATAACCTTATGGTACGAAGAAAAATAAAGGTGTAACATGATAGCTTACAGAGTTTTACAAGATGTCAAATACATTGATGAATGCTTGTTTGGATGCTTTATAAACTTTGTCTTAAAGGACTATTCCAACATTTTTGGAAtgtgcttatttgctttttatGTGAACCTAGATAGAAAATCGTTACCACTCTCACTGTCTTTCACATATAAGACTTCAGCCAGCAGCCTGTTAGCTTAATTTAGCTATAAAAGGTAAAAATATCCATCATCAAACGATTACATGATCAAACCTGAGGCAGAGAAGATGGCGCCCCTGCCTCAGAAATGGAACCGCCCCCACTCAGGTGCAATCACATCACCTTAATGAGAGGCTATAAATGCGGCCTTCCCCCTTTGTTCttcaattttctttcttttttgtgtgtgttctatcttaaactacacacacaaagagacttaTTAAGAAGCCTACAAATAAGACTGCTCTCCATTCTGAACTTGGACTCGTGCTATATCTATGGATGTCTCAAATATACTCCAGCCATTAGGTTGAGAAACGACGAGATTGTAGAACggacgtgacatcatgacttggCTCTCTGTAATGAACAGATACTGTATAAGAGTGGTATTGAATAAACAAAAGCAAATAAACATATTCCCCAAactatttcttaaaaaaaaaaatcataaggCAATGCTATAAACTGAAGAAAACATAAACATGCAAAAATGGAAATCAACATAAAGGCAAGTTGCAAAGGTTTGTGGGTCATGAATCCCTGCAGCAAGACtgcagaaagccttttttgttttctcagtTTCTTCCAAACCAGCAGGGCTGAAACATGAGCACATAGGTATTGGAAGTGCTTCAGTGTGAAATTTCACTCCTCTGTGTGCAGCCTTTGGGTCCCTGCAGGTATAGGTGCAGTGTGTCAGATTCCAGGCCTGCACTGCTGCAGGTGTAGGTTTAATTTGTAAAATTCCAAGTGCCGCAGAGAGCCACCTTTTTCAGCTGGGAGCAAGTCTCGTGATCACACTCAACACCACCGGCACCCAGCCTGACCTCAGCCCCACCTAATTGTATGGGGGCTTTCAAGGAGTCCTGCAGTGAGTTGTTTTTGTTGGAGGAGAAATTGGCccaagaaaaacaaactgtcCCTTTATCTAAAAGGCAGCCTGAAACAACATGATCAGGAAATTatagacatagagagagagagagaaagaaagaaaaagcgGGGCTGTTTCTATGGAATcaagttttgtttttccaaaatggTGGCTTTAATATGAGACACTCCCTACAGGGGATCAGGGAGTGCTCCTTCCCTGTGAGTCGGTAAGCATCATTGAGATGTTTGAGGTATCCAGAGGGGTGTGCTTGGCCTGTTTAGGAGTTGCCATCAAACAAAACCAATGGTTACAAGCTCCTCTTCCATGTTTTCAAACAGGATTTCATGTTTAGACGAGCAATCCGATGAAAGAAAAATGGTTATTTGCATGCTCTGTAGTCAATATGGAAAACATTCAGCTGACAAACAGTTACAGGTAAAGGCGAGGTATCTTACAGTGCATTCACACAGCTCCACAGCTCCAAGCCAAATTTAGAAATAGctacataaaaagtcataggaaaGATGAAAATGCAGCTTTGTCCTAGGTAGCATGAACTAAAGCCAGGAGGTGTCCACATGAATTAGGAATGTTGCAACAGGAGTAGAAAGTTCACATGATGCATTTAAGGGATGTAAATGAACACATGGATCTGAGGTGGATATTTCTTTTGCACATGAAGAACAAAAGAAAGGACTCACAAACAATATCCTGTTGTTTGTGAAAGAGCCAAATGTTTGCTGTAACAATCCAGTCACTCATATTGTTAAGTAAGTGTCGATTTTTAACATCCAGTCTTTTTCACGGCCAGAAGGGGAAACTGAACATCAGCTGTCTGTGGTCAATAAACACCAACAGTTTCCCAGCAGTCACATTTGTGCAAATAAGGCCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128472 lncRNA upstream 14047 13953149 ~ 13954884 (+) True G95236
TU128378 lncRNA upstream 133673 13830850 ~ 13835258 (+) True G95179
TU128376 lncRNA upstream 140450 13825457 ~ 13828481 (+) True G95177
TU128368 lncRNA upstream 143662 13822853 ~ 13825269 (+) True G95173
TU128371 lncRNA upstream 144843 13822853 ~ 13824088 (+) False G95173
TU128529 lncRNA downstream 173866 14145005 ~ 14145318 (+) True G95287
TU128539 lncRNA downstream 235200 14206339 ~ 14208562 (+) True G95297
TU128541 lncRNA downstream 249432 14220571 ~ 14222594 (+) True G95299
TU128557 lncRNA downstream 287146 14258285 ~ 14263886 (+) False LOC120565959
TU128558 lncRNA downstream 287146 14258285 ~ 14263886 (+) True LOC120565959
XM_039811693.1 mRNA upstream 20952 13857034 ~ 13947979 (+) True hmcn1
XM_039811498.1 mRNA upstream 148923 13796094 ~ 13820008 (+) True swt1
XM_039811496.1 mRNA upstream 148923 13796213 ~ 13820008 (+) False swt1
XM_039810412.1 mRNA upstream 552932 13413361 ~ 13415999 (+) True insl5a
XM_039810238.1 mRNA upstream 569187 13390829 ~ 13399744 (+) True LOC120564965
XM_039811906.1 mRNA downstream 24356 13995495 ~ 13999954 (+) True ptgs2b
XM_039811908.1 mRNA downstream 53616 14024755 ~ 14028859 (+) True pdcb
XM_039811907.1 mRNA downstream 53617 14024756 ~ 14028859 (+) False pdcb
XM_039810521.1 mRNA downstream 63118 14034257 ~ 14065550 (+) True tprb
XM_039810523.1 mRNA downstream 63128 14034267 ~ 14065550 (+) False tprb
XR_005640172.1 other upstream 586187 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 748559 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 868486 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2524398 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2720284 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 648219 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 839229 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 839229 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2349355 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3884498 17855637 ~ 17859152 (+) False nppc

Expression Profile