RNA id: TU128541



Basic Information


Item Value
RNA id TU128541
length 404
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G95299
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14220571 ~ 14222594 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGCCCTCCATCTTTGACTCCTTCAGGGTGAGTTTAGGCTCCTTGAAGGCAGCCTTGGGTAGAACTTTAACTTCATCTTTCACTTTGATCTCTGACGGCTTTTTtgaagatgaggaagaggaaggatcACGGCCACTCTTGCTGCTTCCGTCTCTGTCGTTGTCTCCTTTCGACGTGACTTTGCTCTCAGAGTCTTTTCGGGGCCGTTCGCGGTGCTCCTTGGTCAGTTTGTGCGGTTTGGGTCCTTTGCTGCTGCCACCACTTCCCTCTTTGCTGGGCTCcTTGACAGATGAGAGGTCTTTGTCTTCTTGGGATCTGAGAAGGCAGAGAGAGGGATGGTGGGGAGCATCGGGTAGTCTGGACTGGGCCTCGACACGGCTTCAGCCCCCTCTGGAACCACCAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128539 lncRNA upstream 12009 14206339 ~ 14208562 (+) True G95297
TU128529 lncRNA upstream 75253 14145005 ~ 14145318 (+) True G95287
TU128475 lncRNA upstream 249432 13968931 ~ 13971139 (+) True G95239
TU128472 lncRNA upstream 265687 13953149 ~ 13954884 (+) True G95236
TU128378 lncRNA upstream 385313 13830850 ~ 13835258 (+) True G95179
TU128557 lncRNA downstream 35691 14258285 ~ 14263886 (+) False LOC120565959
TU128558 lncRNA downstream 35691 14258285 ~ 14263886 (+) True LOC120565959
XR_005640311.1 lncRNA downstream 35762 14258356 ~ 14261892 (+) False LOC120565959
XR_005640310.1 lncRNA downstream 35763 14258357 ~ 14261760 (+) False LOC120565959
TU128645 lncRNA downstream 146328 14368922 ~ 14369226 (+) True G95372
XM_039810666.1 mRNA upstream 17207 14173719 ~ 14203364 (+) True acsbg2
XM_039810665.1 mRNA upstream 17207 14179012 ~ 14203364 (+) False acsbg2
XM_039810667.1 mRNA upstream 17207 14179012 ~ 14203364 (+) False acsbg2
XM_039811643.1 mRNA upstream 75630 14081556 ~ 14144941 (+) True fcho1
XM_039810522.1 mRNA upstream 155021 14034267 ~ 14065550 (+) False tprb
XM_039810217.1 mRNA downstream 122987 14345581 ~ 14361643 (+) True LOC120564948
XM_039810216.1 mRNA downstream 122987 14345581 ~ 14361643 (+) False LOC120564948
XM_039810218.1 mRNA downstream 127804 14350398 ~ 14361643 (+) False LOC120564948
XM_039811954.1 mRNA downstream 140201 14362795 ~ 14368554 (+) True mob3a
XM_039811953.1 mRNA downstream 140201 14362795 ~ 14368554 (+) False mob3a
XR_005640172.1 other upstream 837827 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1000199 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1120126 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2776038 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2971924 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 396764 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 587774 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 587774 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2097900 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3633043 17855637 ~ 17859152 (+) False nppc

Expression Profile