RNA id: TU128745



Basic Information


Item Value
RNA id TU128745
length 1262
lncRNA type read_through
GC content 0.33
exon number 2
gene id G95447
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14546536 ~ 14639046 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cacaaaaaattacagttttatatctttatgtttgaggcctgaaatgtggcaaaaggtcgaaaagttcaaggggaccgaatactttcgcaaggcactgTAAACAGAATGGGCCAAAGACTTTGCACAAATCACTTGTATGAAATGTTAAATCAATAATAGGAAGGCTTTAATTGAGATGCATCAGGGAAGTGCAAAAACCACTACAGTGTGTTTGATGCCATTTCAAAATATCCAACTATTATTAATCATTACTGCAGCATTTTAAATAATTGAAATCATTACTATGACAATAAGTGACTAAAAGTTACTGACATACTATGTCATCATATTAGAAAGCACTTGTTTGAATCGTTCTACTATTTCCTGCAAAATTCCATCGTGTATGCAGCTGTTTAATATATTGTAATTATTtcgaatttttttttcttcgttttTTAGGATAGACAGACTGTCTGTGCTAGAAtacttgaatgaatgaattattgttAATACATATCAGGCATTATTTCCTACCAAAACTATGCTATTCTGCAGTGTTGTTTTTACCATGACAAGTAAAGTTAAGCTCTAATATGATAGCATTATATTagtataaaactgtaatttgacACATCTTTGACACAAGTATTGTTGATGTCCGCATTGACTGAATCAATTCATCACAACACTGTGTCTATTTAACATCTGTGCTGTAACTCCACAGGCAGACAGCCGGCATAAGGAAGCTATTACATCCTGTAACATCCTGTAATAATTTGAGTCTGTTATAACATAAGCCGACATTTTCTCAGTGCTGCATGTGTTGAGGTATTTATAACGTTCACAAACCTCTGAGCCTCTTCCATCGAATCAGAGGTGTGAAGAAGCACAGGTTTTCTCTTTGATTCAACAGAATTTGATAATTTTTATAAATAGATTATTTTTatacaatgtatttttttttatttgtgagggttatttagatatttaaaaaaaattgtagcagggaattcactgAATCAGTTGAAGATACAGCTCTGATCAGAGAATCAGAGAAATGTGACAGATTTGTATCAAAGAACTCAAGCTCACAAAAGCTCATCATTTCCATGTGGTGGATGGATTGTATATATGATTGTCCTGAATTTTAGGAATCTGTTCatgttgtattttgtgtgtctTACATTTTGTAACTGATTGCCTTTGACAAGTATTAcacaaacagctgatttgaaatgttatcaaagTAAATTATAATTAACTGTTTGTCCTCCACAGTCTTt

Function


GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128645 lncRNA upstream 177310 14368922 ~ 14369226 (+) True G95372
TU128557 lncRNA upstream 282650 14258285 ~ 14263886 (+) False LOC120565959
TU128558 lncRNA upstream 282650 14258285 ~ 14263886 (+) True LOC120565959
XR_005640311.1 lncRNA upstream 284644 14258356 ~ 14261892 (+) False LOC120565959
XR_005640310.1 lncRNA upstream 284776 14258357 ~ 14261760 (+) False LOC120565959
TU128779 lncRNA downstream 50336 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA downstream 56636 14695682 ~ 14698562 (+) False LOC120565380
TU128781 lncRNA downstream 60504 14699550 ~ 14700145 (+) False LOC120565380
XR_005640293.1 lncRNA downstream 148022 14787068 ~ 14791606 (+) True LOC120565827
TU128805 lncRNA downstream 240036 14879082 ~ 14879287 (+) True G95492
XM_039812080.1 mRNA upstream 2008 14537576 ~ 14544528 (+) True babam1
XM_039810587.1 mRNA upstream 47962 14480454 ~ 14498574 (+) True si:ch73-61d6.3
XM_039810588.1 mRNA upstream 47962 14482779 ~ 14498574 (+) False si:ch73-61d6.3
XM_039810580.1 mRNA upstream 67469 14469044 ~ 14479067 (+) True mfsd12b
XM_039810581.1 mRNA upstream 67469 14469044 ~ 14479067 (+) False mfsd12b
XM_039811168.1 mRNA downstream 53458 14692504 ~ 14704353 (+) True LOC120565380
XM_039812299.1 mRNA downstream 171323 14810369 ~ 14912885 (+) False dennd1b
XM_039812295.1 mRNA downstream 171324 14810370 ~ 14923845 (+) True dennd1b
XM_039812296.1 mRNA downstream 171324 14810370 ~ 14919627 (+) False dennd1b
XM_039812297.1 mRNA downstream 171324 14810370 ~ 14919627 (+) False dennd1b
XR_005640172.1 other upstream 1163792 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1326164 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1446091 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 3102003 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 3297889 11248575 ~ 11248647 (+) True trnam-cau_8
XR_005640328.1 other downstream 171322 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 171322 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 1681448 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3216591 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 3227502 17866548 ~ 17866681 (+) True LOC120566215

Expression Profile