RNA id: TU128807


Basic Information

Item Value
RNA id TU128807
length 1652
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G95493
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14923952 ~ 14925603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgcatCGGCTTACTGATTATGGCAAACCCTAGAGTAAAAATGCTAACCCTCTCTTACAGTATCACAACACTGTTCCTAAAAAGACcttataataataactttgtCGACATGAAATACATTAACACAAATAAATTCACTTTAATCAAGCACCACATTGTCAATGTACAGTTGCCAACAATTAAAAGTTGAAATTAAATTCACAGTTTAAAACATGATAAACAAAAATCACCATTACATTATATACACTTAAAATGACACTGCAGTCAAGACAGTTTTTGTGTCTAACAACACACGAGTCAGCCTAGAAAAACTAAGAAACTATTCTCGACAAGTGCAACTTATCCTGAAATCTGACTCTCAAGTACATTATTCTGTCAGTAAGAAGCTACAGCATTTCCAGTGGAAATATTCACTGAAAGATGAATCAAAACTGGCAGCAAGACTCAGCGTGTAGACATGTAATACATAAACAATTTGAAAGTCTTTTtccagcaataaatccaaacagATGGAAGTTCATGAATTTCAAGGCTTGGtgattttctatgtttttgttatCAGCAAAtaccatgaaaagaccaaaacactgaattgatcatttattttgagccaatcccacatacagtacacacggTCTTGCTACAGTAAATCACTTGAGCACCAAATGTGCATTAATgcgcagctgaaaatagtccccaacaaatgcaatattaactcctgtttgagtaatgtttgctaaaaagAATAGTGCCCCGCTGTTTAAGGAAACTACTGAGCATGTTTTTAAAGATTCATGTCTTCACTAGGAACCAATGAAAGACGGACTAACATGTTTGGTTTTGATAATTTCATggaatttgttgacaataagaaaaatatagaataatgcTATCCTTATCCTTTCATGAGGAACAATCTGACTCATTCTGCTCGTTTCCAGATGAGGctttaaaacaatgttttatgTGTGTCCAAAATTCGGATCAAATGGTCCATCAATCCTTAACAAATATGGATCAGACGCATAGATGTGACAGATTCGATACGTTCTGAATTGAAATCTTTGCATTTAGATGGATGTACTGCTGACTAGTGTAGCCAGGTGCAAAACATTGCAGGAAGATGGATGAAGCACTGAGATATACAATAACACAAGAATGGTGTCACAAGATCTCATTCAGTCTTACAGCATGTGAAGAAAGACAGCTGTAGTTTCAAATGGAGGTACTGTGAGGCGAAGACCACGTTTACATGCAGGCTGCAGATATTAATTTAAGTTATACATCAGGTGTATTTCTAGCATCAGCTCCTTCATTACTACAATAACCACATTACTACCCTGCATGTAAACACAGTCCCTGCATCTTATATGAGTCTCTCCATAGGTGGCGGCTGGGTGATGCTCCACATCTCCACCCGTGACCCCTCCTTCTCCTGCCGGCTGGGACTGTAGGTGCCGTGGGTGGCGCGGCGATTAAGCGTCATCACCAGGCTGACGGAGGTGAGGATGAGAACCAGCAGCAGGACGACGGACACCAGACTGACGGACAGtaagaggtcagaggtcaagcCCTCAGAGGTTAACTGGAGggaaaaagacagaaacatttcctttggtctaaaaaaaaaacgctcatTCACATGAtacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128802 lncRNA upstream 116 14922981 ~ 14923836 (+) False dennd1b
TU128805 lncRNA upstream 44665 14879082 ~ 14879287 (+) True G95492
XR_005640293.1 lncRNA upstream 132346 14787068 ~ 14791606 (+) True LOC120565827
TU128781 lncRNA upstream 223807 14699550 ~ 14700145 (+) False LOC120565380
TU128779 lncRNA upstream 225390 14689382 ~ 14698562 (+) False LOC120565380
TU128812 lncRNA downstream 4909 14930512 ~ 14932081 (+) True G95496
TU128813 lncRNA downstream 5466 14931069 ~ 14932081 (+) False G95496
XR_005640228.1 lncRNA downstream 296530 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA downstream 305768 15231371 ~ 15268185 (+) True LOC120565370
TU129007 lncRNA downstream 370681 15296284 ~ 15297193 (+) True G95640
XM_039812295.1 mRNA upstream 107 14810370 ~ 14923845 (+) True dennd1b
XM_039812296.1 mRNA upstream 4325 14810370 ~ 14919627 (+) False dennd1b
XM_039812297.1 mRNA upstream 4325 14810370 ~ 14919627 (+) False dennd1b
XM_039812298.1 mRNA upstream 4325 14810371 ~ 14919627 (+) False dennd1b
XM_039812299.1 mRNA upstream 11067 14810369 ~ 14912885 (+) False dennd1b
XM_039812289.1 mRNA downstream 23565 14949168 ~ 14961237 (+) True axdnd1
XM_039812290.1 mRNA downstream 23569 14949172 ~ 14961237 (+) False axdnd1
XM_039812291.1 mRNA downstream 23800 14949403 ~ 14961237 (+) False axdnd1
XM_039812294.1 mRNA downstream 40663 14966266 ~ 14984677 (+) True tdrd5
XM_039812293.1 mRNA downstream 40939 14966542 ~ 14984677 (+) False tdrd5
XR_005640328.1 other upstream 7346 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 9919 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 302539 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1541208 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1703580 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 1394891 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2930034 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2940945 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2943063 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2946107 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile