RNA id: TU129122


Basic Information

Item Value
RNA id TU129122
length 1006
lncRNA type sense_over
GC content 0.47
exon number 3
gene id LOC120564959
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15523929 ~ 15632812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCACCCGTCTCGGACCCTGAATCTGGCTGCCATGTCGGTGCGGAGCCCCCACAGGACGCTGGCCTCCCCGGGGCGGGAGGTTGGCGACAGAGAACTCAGCAAGGAGAGCGACGGGGTGGAGTGCCTACGTATGGGCACGTAACAACCAGCACAACCTGCCCCGCCTGACAGACACGAGTGCTGGATGTGGAGAGACGGAGGCAGGGCAGGCCTTTACCAATAAAGTCTGTAAAATCACTACTGTCCCTTTACACTGGAGACACCCACTTGGGAGAACTGTTTTATCTTATATTTTAACCAAGAGAATAGTTTCAGCCCCTCTTCGGGAGCCTGATTGGCCTTTGTGTCCCGTCCTGCTTTGTTGTAGCTTCAGTTCAGAGTCCCAGACAAAGACTGCTGCATTTTACCTGGGAAGAAGAGTGGAGCCAAGGCAGGATACTGGAACAAGAACAAAAGCTATAACCCAGCAGCTGTCCCCTTAGCTCTCCTGCAGCACAGGAAGTGAGAGTTTTGACATTTCCTGTTCGTATGGAATACTAGCCCTGGGTAGTTTGCACAAACCGTGCCGGTCACCGTGGCTGAACAGAAAAGCAAGTTTTCAGAGGAGTTACATCGGCATGTTAAAACAGCAGTGTGGGCGTGGCTCTCTACAGGAAGACATCAGTGCTATACGGTGTTGTGTTGAGCAGGAAAGTCCCTGCACTCTGTTATTGTGTCGCACTGATACTGCCAACATTAAATGTTCATGCTGTCGGTTTTCTCAGCCTCTGTGATGTGCAAACTTCTATAAAGATATTTATTCTTCAAACATGTCTGTCAAGACAAAGTACTGTAACATTGGACATTTTATGTTCTGAAGCCTAAAAATCAAGTATGCTTTACAAGTATACATCTGCCactccaatgtttttgtcaaagaaaataacTTTGTTTCTCATTCTAAGCCAAAAGACTGTCGGAAGTTCAGGGtgttttaaatggaaaatgccaataaagaaaatatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129093 lncRNA upstream 150812 15474594 ~ 15478157 (+) True G95710
TU129053 lncRNA upstream 239827 15387998 ~ 15389142 (+) True G95681
TU129007 lncRNA upstream 331776 15296284 ~ 15297193 (+) True G95640
XR_005640228.1 lncRNA upstream 360784 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA upstream 360784 15231371 ~ 15268185 (+) True LOC120565370
TU129124 lncRNA downstream 108 15632913 ~ 15633568 (+) True G95729
TU129126 lncRNA downstream 1693 15634498 ~ 15635947 (+) True G95731
TU129130 lncRNA downstream 6947 15639752 ~ 15646044 (+) True G95735
XR_005640275.1 lncRNA downstream 43605 15676410 ~ 15681761 (+) True LOC120565654
TU129209 lncRNA downstream 103147 15735952 ~ 15738435 (+) True G95799
XM_039810132.1 mRNA upstream 106564 15513151 ~ 15522405 (+) True LOC120564879
XM_039811900.1 mRNA upstream 116694 15506857 ~ 15512275 (+) True LOC120565844
XM_039812071.1 mRNA upstream 123748 15498026 ~ 15505221 (+) False mpv17l2
XM_039812074.1 mRNA upstream 123748 15498032 ~ 15505221 (+) False mpv17l2
XM_039812072.1 mRNA upstream 123748 15498038 ~ 15505221 (+) True mpv17l2
XM_039810272.1 mRNA downstream 87384 15720189 ~ 15723206 (+) True LOC120564991
XM_039810903.1 mRNA downstream 138488 15771293 ~ 15775561 (+) True gamt
XM_039810159.1 mRNA downstream 255771 15888576 ~ 15896422 (+) False LOC120564897
XM_039810158.1 mRNA downstream 257249 15890054 ~ 15896422 (+) True LOC120564897
XM_039811038.1 mRNA downstream 357745 15990550 ~ 15994166 (+) True LOC120565334
XR_005640328.1 other upstream 712363 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 714936 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1007556 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2246225 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2408597 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 687689 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2222832 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2233743 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2235861 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2238905 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile