RNA id: TU129217



Basic Information


Item Value
RNA id TU129217
length 248
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G95806
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15766763 ~ 15767010 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGTAACTTCTATTTTTCCCTTTAATTGCGTTCTGGAAGATGTGATTCACATTTTTGGTTCTTGACTAAACTTCTGTCTGTGAAATCTGTTGGCACATAAATTGAAAAACACAAGGAAACTCTGAGGTGACTGATAAGAAATGAGGGACTTAAGCTGGTTGACCCGTGGAAGACTTTTTCTGCCCTCTGACTCTTGATAGCTGGACATTCCCTTTAGTTCGATCCTGGTGGAGAAATTCTGAGGGCAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU129215 lncRNA upstream 14673 15748410 ~ 15752090 (+) True G95804
TU129209 lncRNA upstream 28328 15735952 ~ 15738435 (+) True G95799
XR_005640275.1 lncRNA upstream 85002 15676410 ~ 15681761 (+) True LOC120565654
TU129130 lncRNA upstream 120719 15639752 ~ 15646044 (+) True G95735
TU129126 lncRNA upstream 130816 15634498 ~ 15635947 (+) True G95731
TU129238 lncRNA downstream 12855 15779865 ~ 15785647 (+) True G95814
TU129259 lncRNA downstream 47528 15814538 ~ 15821366 (+) True G95830
TU129278 lncRNA downstream 128667 15895677 ~ 15896005 (+) True G95844
TU129289 lncRNA downstream 164018 15931028 ~ 15934580 (+) True G95853
TU129311 lncRNA downstream 206171 15973181 ~ 15974350 (+) True G95873
XM_039810272.1 mRNA upstream 43557 15720189 ~ 15723206 (+) True LOC120564991
XM_039810232.1 mRNA upstream 133951 15523929 ~ 15632812 (+) True LOC120564959
XM_039810132.1 mRNA upstream 244358 15513151 ~ 15522405 (+) True LOC120564879
XM_039811900.1 mRNA upstream 254488 15506857 ~ 15512275 (+) True LOC120565844
XM_039812072.1 mRNA upstream 261542 15498038 ~ 15505221 (+) True mpv17l2
XM_039810903.1 mRNA downstream 4283 15771293 ~ 15775561 (+) True gamt
XM_039810159.1 mRNA downstream 121566 15888576 ~ 15896422 (+) False LOC120564897
XM_039810158.1 mRNA downstream 123044 15890054 ~ 15896422 (+) True LOC120564897
XM_039811038.1 mRNA downstream 223540 15990550 ~ 15994166 (+) True LOC120565334
XM_039812387.1 mRNA downstream 255567 16022577 ~ 16031978 (+) True tmem38a
XR_005640328.1 other upstream 850157 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 852730 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1145350 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2384019 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2546391 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 553484 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2088627 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2099538 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2101656 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2104700 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile