RNA id: TU129259


Basic Information

Item Value
RNA id TU129259
length 6787
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G95830
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15814538 ~ 15821366 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttcacacaaacacatattgaGTAAATAGGCAAGAAAAAATCTTCacccttccaaaaaaaaaaaagataagaaaaaataaaacggTTGCATTGCCCGACGTGGTTACCAGGAAACATCCCATTCATTAAACTAATTGAATCATTTATAGAAAAAGGAGGAATAAGCACACATTAAAAGAACAGACTGAAAAACGACTCACAGTACTAACGGTGCTCCTAGAAGCAGTACTTGTTGTAGTTATCTGTTGAGCTGGAGGTTCCCTGTTGATGCTCAAATAAACTAAACAGCAGAAGTGTTACGAACCtgtaacacagagagagacagagagacggagagacggAGAACGACACCCCAGAGTCCAAAATAAACCTCCCAGTCACCTACCAGGGTGATAAATATCTGTTGAAAGTATTTAGATAATGATATAATTACACCACAATACTCGTTTTCAATACAATCGCACGTGTGTAATGAGATCCTAACTACTCTTTAAGTACTATACTAGTAGTTGTAGCTGATTTCAGACCTTGGTGACCACTCTCACGCCCTCTTTGCGTACCCACTAAATTGTAACTTGAACGGGGTTAAATGCATCAAACTAAAGGTAGAGGTAGATTTTCCTGACAAGTTGAAAGAGACAAGAGCCTTGTTTCAATTCTGAAGTAAACTTGAAGCCACGtgaagcccacacacacatcatacagTATGCTTCCCTAAAATAATCACATGATTATTATCATCATTGCTGTATTAATAAATCTGCTTTAAATGTAATCTCTGTATGCCAGGGTTGCTAAAGCATATCCAGGAAgcaaagaaaaagcaaaaacaatatGAACATGATGTAATTCATAGCCCTAAAAAGCCATATTTCAGAAATATTCTATTTAATGAATCTTAGTAATACAGGTTAATTCATACAACAATTGTCACAGCAGAAGGCATCTTGTTATTTTTTAGTTTTCCTTGTCCACATCCCCCCTTGATGGAGGTAAAGTCAGTGGTGAAGTTCAGTCAAAAgcccctaaacccaacaggcaCCTTAACCCGTAAATGTTCCAGCAGAATTCCATGTCGGCAACATGTGGGAGCAGGAGTCATTGTCAATTTTCGATGCAGGACACTCTGGATCTAGTAAGGTTTCAAGAGGTTATTTAGCTACGGCTCTGGTGGGAGTGAAAGCAGCAACATTTCAGTGTAAAACACTTAAAAGTTATGACATAGAGCAAGCAAGCCAACCACAAGAGACTCGGAGGGTTTGTGCTGATTGGGAGTCAGGCCCTGAAAAGGACTACATTTACTACCCATATTGTTGCGaaatcaaaatcaaagacaaactAAATGCATCCGGCAGCATGTGAACGCACCAAACAAGCAGACTTTTCAAATCAACCCATGcttttaaactgcattaccaCACAACAATAATATAACTTTGACAAGAACTACAGACACAAAGTCTTGTGCGAGCAACGTCTAAGCTAATGATGAAAACAAAGCAGCTACAGACATAAAAAGCAGCTGGTCACATTCAGAAACAAATCTGAACCAAAACCTCCTATAAACTCTTTTCAAAACTAAGAACAACTTCTGGTTTCATACTGAGTTAAGACTCATACAGTTTTCACTGCCACATTGCTCCAATGTTTCTTAAAATATTGAGGAACCTGCCTGATGGAGAGAAACAGATGGGACAGAGACAGGATGTTTGATTATTGATTGTTTACTATTTTTAataactacatgaattatgtaagtGAATGCTTTTAACAGAGTTTGTTTTCAGTGGAGccttttaaacaatgtttttttttaatcagtggAGCCTTTTAGTATCCCATTATAATGATCTAATGAGGCTTTGTCACCTTAACAAGACAAAAATACTGGAAACACTGGAAGGAAATGAAGATATGAACACTGAAAATATGTAATTTGTTAGCAGTAAATGTTCAGAGTGAAGGACATTGAATCTTTGCAGCCTTAGCTCAGACCTTTTTGTGTTTCCATTTGAAAAATCTGAAGTGATTCTGCGTCATGACAAAAACTTCCCACTGAGGGGAGCTCTTGGTTAAGTCGTTGAAGCTTGAACTGAACCCTCAACTATACTGACATCTCTGGTTCCCCTTGCAATAACCAAATAACCAAAAGTGATATCTGATTGTCTGTGGTAATTACAATCTCTTTCATAGTCAATGTCTTCATAAAccagcaacaacaacatttcAATGAGATTTTCCTGCTTGAACAGTCTGTTGTGGCTGAAgcaaaaaacatatatttgcCAAAGCTTTATTAGTTCTTGAGGTAGAAACAGAGCTTGATTGTGGTTGAAGGGATGTCAGAGTGTTTGGAGGTATACTGTGTTGTCATAACATCGTCGGATTGTCGCTACCACGCAATTAAAACCACTCCCTGAAGATGCTGCCGTGCATATACTAAAAGAGAGCGAGAACGAGAGCGAGAAAACAGTACCTCCACTGTTTAAATGCAAATATCTCACAGAGCCGGTCGATAGATATATACGGTAAACACGGATCCATTGAAGAGGGCAGGTGCTTGAATGTTTAGCTCAGGGGCCAAAAGGTCACAGGGTCAAATCTAAAAAAGCAATGCTGATCCTTTAGATCAGTATTGATTGAATTTTGATTGCAGCAGCCCTCCCCCACAATGCTAGAACACTAATGCTTTCAGCCATGCATTTCTCTTTTGATTGTCAGCCATTATCAGCAACTGTGACATCTGCtactcacagagagagagagagagagagagagagagagagaaacatacaTGGTGGGCTTTCTGAGTGCCACCAAACAGACTGAGTAAAAACCTCCTTTAACATTGTAGTTCATGAAATTTACAGCTGGTTGCACAGAGTAATCGAGGAGAAAGACAAccctaaatgtaaatgtttttttttaccctggGACTTTTTGTCATAGTTATGGCCTATATGGATTGGCATAGCACCATATTACTGTAGAGACTATTCTGTCCTACAAAGGCAAAACATAGTAACTACATATTTGGTCAGAACTGGGTTAACCCCAGAATCAGACTTTTTGACATCGTACTTTACCATAGAAACCGTTATACCATCAAATGTATATttttggagggaaaaaaacatggaagATTCATAAAAACTGCGTAGATAGCCTCAGCTAAAGCTAATTTAGCCATTTTTTCCGTGTTTCTTGGAATTGAAAAAACTATTTTGATGCTCCAAAATCAAAGCAAGTTGTTATACCATATAAAAAGACAATAGCTATAGCTTAAATATTAACGGAGAAGGAAAAGGAACACCAGATAAAACTAGTGCTGCTAAATGTTAACTAGCCTAGCTAGCAGAGCAGCAGTAATTGCCTTCTCTGCAGCATCCAACTCTTGTGGAATTTCAAATACTTTAATGTGGTAAGGCTACCTCTATATCACAATTAAAGAGGAATTTATTGAACTACCGTTCAAATGGACAAGATAGCCgaggaaaaaacattttgtttgagAATACTGGGTTTTCCCTTGAGATTGTTCAAACATAGAGCGTAACATTCGTATTGTTGTATGTAAGGTCTATGAAAATGATTAATAATCAACATGATTAGCATTGTTTGAGCGATTCAAAGATTGTTATGCCAAAACTACAACAATAAGACCCAGATTGCATTAAAAATATCTAAATTTCCCTGAAATTTCAAATGGCCGTTGttcaatactgtaaatgtagCCATACTGTACTTCATAAAGCTTTGGATAAAAGGTGTCTATCATTATTGTGCATCTGTAAATGACTCTCAACACGACTCAATTGTCCACAGTGAGGAAGCAGCCAGATTTACCTACATTCTTCACTGTAGAAATACACATTTCCTTCCTTTGTAACAAATCTACACCAAGAGCCTAACCAATAACGAAAAAGGGGACACTTGTGCCACCTGCAGCCAACAACTGCAAGTTTGCAGCTGCAAagttctgtattttgtgttgagTAACTATAAACTTGGGACCTATtgaaattattaataattattaattaagtGCCTGAGAAAGCTCAATGATCATGAAAAAAAGCTTACAGTTGGTATTGTACAATCACAAACTGAGTTCTGGTTTGAGTAGTTAACAACCACTGAAGGTTAGTGAGACGCAATGATTCTCCAtcattatttatgtatatagtgtGATGGCCCCAGCATCCTTTGCCTCGGTCCCgtgtagtgtgtgtgcgtgtttgtgtgtgttgcagggtCTTGGTTGGGTGGAGCTGAGGTGCCATTGCGGACATCTGACCAGTTTTCCTAACAGTAGTTATTTTAGCCGACAGGTGATAcaagtgtaaaaatgtaaaactcaAACACCCACAAAGAAAACAGCAACTATGAGACATAAAGAGCCCCCATGTGGAGAGTCAGCTGCCGGTTAAAATATTTGACAAGAATTCCTCTTTCCTCACTATGGAAACACTATGGTTTTCAGCTTCATTAAGATTTAACACAACCAATAACATCCTGTCTCTGCTTTCAGTTCTGTCCATAGACTGTAGGCCTGTATAAAGATGGGCGACGtctctccacttcctcccactgtacaaaagtaaagccaaaatatcccggaAACTTTctaattttggagccagagtctgcgcaGTAGTGATTGGGCAGTCCCGCCAATACACCCACCTGACCAATTgcgagtcaatcacagctgtcaatcacaaCGTTTCACcccatttttatagcatcaaataacaaataaaaaccaaacGTATCAGAAAAACGAACACTTCAACATACATTGAGTGATAAGAACTACCTGATGACAGgaatgacagaaaccatcttagggaaaatgtgtttgacgtgtgattttttttgttggatttaTGACCGgtcctgcagccagccaccaggggggcagtctagatgttttggcttcacctttacagtctatgcatcaaccCCTGGTTCTGCCTCTGACAAACTAACTTAAAATCCAACTAAAgcttcacttttctttttgtagGATGTATTAAAACAAGTGAGGCTGGACAGTTCACTTCTCACTATTTTATCAAACCTTTAAGAAGagcatttcattattttgtgtgtctttgaatGAGAGTAATGgtaaagtagcctactttacaaAACTGAACAGTGTTTGCGTAGCAGCTGGTGGTGATTTCCCACCGAGAAGCGAGTCCAGAATCAAAGCCGCGACGGCCATCTGGTGATATTTGACTGGAACAGTAAAAACTGATTAGACGGAGGTACTGCTGGCTCTCTGGTCATCTCATGCTGTGTTAAGGCCTCCAAACAGAACCCACATACAAAGCCTGATTTACTTCCTAACGTCAGTAGGAATGAGGCTGCTTTGCGTCGAGGTGGGGTTGGGTGGGTAGAGTAACAATCTTTAACAGTTCAGAGAGGTAACACAGGTTAAAGTTCAAAAAGCTGATAGATTGATTGACTTCAAAATGCAGAAACACAACTACACATGAATGATATGGTATCTCCACTGTGGCAGATTTCACTTTTTATAAATCTAACTGCAGTGAGTGTTTGTACAAACAATAAGACACAAGCAAGCGCTCAGCCGCAGCTATTACCTCTGAGATCACATTGTCAAAATCCCCAATTAAGCAACGTCTAAAAAAATAGTCAGAGGATCACAAGACATTCTCTGTTATATCCTTGACAGCCAGCCTCAAGGAGACCTGGTCCATGTCACAACACAGGATAAGAAGCACTTGGATCAGAAGAAGCACTAAATCATGTAAAACACAAAgctgaaacaaaaaataaaatcatctgtAATCTAtaatacaaaacaacaacaaaacgtcTGATACGAGCTGAAGTAACTAAAGTTAATAAGTTGCTCTGAAGCTCAGATAGCGTCTCCTGACACCTGATTGTCCACGTGAGTGTCTCCACAATGACAAGGATTTAGTGGATACACGACTCCTGTGAATTTAAGACAGGAAATCACAGTTTTCCTGCCTCACTCCTGATCCCTGAAGGGCTTTATCTACAAATACAGGCATGCATATGACCTTAAGACAATCACTCCACTAGAAGGCCaagttagaaaaaaaattaaaattaaaaattgatCTTTCCGCAGAGAAAGATGTTAAATACATTGCTCTGTCAAGAGATTGTACAAAGCGATGAGCTGACGGACACCTGAGAACAATCAGAAACGTGTATTATTCACATACGATCTGAAGCCCAAACAGCAACAGTTGATGTGTTGGACTGAGGCTCAGAAAGTCCAGCGTGTTGAGATGCATcgagcaggaaaaaaaaactcaagaaAGGCTTTAGTTCATTTTCCCTACCTGACCTTAGAAAACAGCGATTTTGAACACTAACTTGACAAACTACCTGCAAGACTGGCACAGATATACATTAAACGGTCCTTATGTCAACAAGCAGATAAGGATTTTAGATCAAAATGAGCCAGCTGTCTCAGGAAGAAGACTGCTTGAATTCATCAGCTACATAGCACTCTAGCTAACTCGCTACTGACGAGACTCTGGTAGCAATAGATAATAGataaaatgtgtgaaaaagTGAACCAATATTCTGTTTTCCATTTGTGTTTCACTGGAGAATCTGTGGCATGCCGCAGACCGGCACCGGACTCTTCCAAATCGGGATCCAAAATGGCTGCCATGTGAATAAGGTTTTACACAAAATGAGGTCACAACGGTAAATTGTTATATGCCCTAACGAAACAACATATACCttttaaagcttttctgatttaAAATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129238 lncRNA upstream 28891 15779865 ~ 15785647 (+) True G95814
TU129217 lncRNA upstream 47528 15766763 ~ 15767010 (+) True G95806
TU129215 lncRNA upstream 62448 15748410 ~ 15752090 (+) True G95804
TU129209 lncRNA upstream 76103 15735952 ~ 15738435 (+) True G95799
XR_005640275.1 lncRNA upstream 132777 15676410 ~ 15681761 (+) True LOC120565654
TU129278 lncRNA downstream 74311 15895677 ~ 15896005 (+) True G95844
TU129289 lncRNA downstream 109662 15931028 ~ 15934580 (+) True G95853
TU129311 lncRNA downstream 151815 15973181 ~ 15974350 (+) True G95873
TU129314 lncRNA downstream 158386 15979752 ~ 15980626 (+) True G95876
TU129315 lncRNA downstream 159324 15980690 ~ 15981498 (+) True G95877
XM_039810903.1 mRNA upstream 38977 15771293 ~ 15775561 (+) True gamt
XM_039810272.1 mRNA upstream 91332 15720189 ~ 15723206 (+) True LOC120564991
XM_039810232.1 mRNA upstream 181726 15523929 ~ 15632812 (+) True LOC120564959
XM_039810132.1 mRNA upstream 292133 15513151 ~ 15522405 (+) True LOC120564879
XM_039811900.1 mRNA upstream 302263 15506857 ~ 15512275 (+) True LOC120565844
XM_039810159.1 mRNA downstream 67210 15888576 ~ 15896422 (+) False LOC120564897
XM_039810158.1 mRNA downstream 68688 15890054 ~ 15896422 (+) True LOC120564897
XM_039811038.1 mRNA downstream 169184 15990550 ~ 15994166 (+) True LOC120565334
XM_039812387.1 mRNA downstream 201211 16022577 ~ 16031978 (+) True tmem38a
XM_039810948.1 mRNA downstream 213346 16034712 ~ 16047921 (+) True LOC120565290
XR_005640328.1 other upstream 897932 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 900505 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1193125 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2431794 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2594166 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 499128 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2034271 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2045182 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2047300 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2050344 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile