RNA id: TU129778


Basic Information

Item Value
RNA id TU129778
length 2864
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC120564955
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17620798 ~ 17636720 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atcctgatcaaagataactcctaaatttctaacagtggtgctggaggccagggcaacaccatccagagtagctatatctctagataatgaagttcggaggtgtttagggcccagcacaataacttcagttttgttagggtttaacatcagaaaattataggtcatccaggattttatatccttaatgcactcttgaaattttgctagctgactggtttcgtctggtttgattgacaagtataattgggtgtcatccgcataacagtgaaagttaattgagtgttttctaataatattgcctagaggaagcatatataaggagaatagaattggtccaagcactgagccttgaggaaccccatggctaacctTTAGCGTgcacttggaggatttatcattaacattcacaaattgagatcgatcagagaaataggacctaaaccaactcagagcaattcctttaatgccaaccaagtgttccaatctctgtaacaggattgaatggtcaattgtgtcaaatgcagcactaagatctagtaaaacaagaatggagacaagacctttgtctgcagcagttaaaaggtcgttagtaattttcaccaatCAGGTGAAAGGGGAAAGAGCATACTGAATGCAGTCATTTAGCAATCATCAATTTCTGCATCTTTCTGATTTTCTTTGTTCCAAAAAGATGTTGAAATAGAAACACTCTCAATGAGGTGTTGACAGACTGGTTATCATGTAGATTAATTTAGTTTTGAAATGGATTTATTACAAAAGACTGTAGATGTTtcatcagatgaaaaaaaaaaaagattaaatccTTATAACCTTTATTCTTTGACACACCATGACTGCCTGTATCCCCTCCACACTAGAGAAACCTCCTACTACTCTTCTGTTATGTTTGGCTATTTTCATATGTCGCCGGTTTCCAGCAATGCTACAGTGGAACACCATAAGAAAAGAAGGTGTGTGGAAATAATAATTtcacagcttttctttgagcaTTCAGCCAGTTCCttttatgtgtatttttgaGTGACAATAAATCTCAGAAAGAGAACTTTGTACTGCCTGATGCTTGCTTTTGCACAATGGGAGCTTTGTATAGCCTCAGACAAACTCTGGAAGTGCAGGAGCATGGGTAAGGGTAAGGGTAAGGGTAAACATGCTTGATGGTTGGTATTGTACACACCATGGGCATATTTCTGACACTCTGTCATACAATACGCAATGCAGGGTGAGGTGAAAGCACCAGTTTTAgtgggaaagaaaaagaagaaaaaaaactcactatCGAAACAATTCAGTGAAGTGTAGAATATAGCAGGGACTATTTTTAAACTGGGAAAAACCCCACAGCCTGTACTTTATGAGAAGGTCATGCAAGGCAAGATGGAGAGGTGCCATGAATGGGGTTCTGGCCGATGTGCAGCTGCcgttttgtgtctttttctccctctgtttCCTTTCCTCACTTCCTCCAGTTTGTTTCAGGGTCTGCTGGTGTCTTTGTGTGAAGTTACTGCTTATGAAATAGAAATACTGTACACTTTTTACTATATCAGTTGGGTTTTCGCAAAAATGTATGTACAAACGGGACATGTGATGTTTGCTCACTGCTGTTTTGAAACAATATTGCTTTGGTGGTTGCTACTGCAGGCCAACAGTATAGGAATCTGGCAAAAATAAGCAAATGATGGTTTTACAATCAGTCAGTGTGCTGGGACCTTGAGACAAATTAGTTATTCTGTGTTGAATCCATGTGTGAAAGTCATGCATCTTCAGAATGCTGAcagattattttgtttaaatacTCAATGATTTAATGTTTTTGCACTTTACTTCTCATATACCACACTACCAAAATTACCTGTCTTAATAAGTAATTTGGTCTCATATTCTCCTATTTCTGTTTTGACCCTTATTTTAGGATTGTTCACACAATAGATTGCATTTGGTAAAAACTATATTTCTATACAAATACGCTTACACAGTCTATGACTTTATTTCTACATAAACCACATAGGATGTGTGTCACCTTTCTCTAgtcatttgctgcatgtccttGCCATGTTAAatgcaaaaagagagagaacatcAGATATCAGCGCGGCTGCATCCTCCCTACACCAGATCCAGCCAGATCCACAGATAGACGTGAGGCTGACGGAGAGAGTATACAGCCCAGACAGGATATTAGAATGGACGTTTCCTTCTTCAGTACGCCACAGGCAGGGCCCTCTCCCACTTGTCTTCTCTGTagaaagacacagagaaaaGATAAAGATGTGAGCGGAGCTGACAGGCTGCTGGAGCCACGGTCTCCTTCGCTGTTTGCATCTTGAGTCGGTTTCTGATTTGATTCTGAGAGGATGATTGTGACGGGGGCTTTTTTATTATGCGGACAACAGATGGCAAGGGATGATGCTGATCTCTATGTCCGAGATGCTGTTAACCTTCCAGGATTCAATGAGaaacaggtggtgggcccaaaCACGTGCTCTTGGCTCGGaggaaacaccaaaacagtGTAATAGCTGACATGTTGCTAATAATGCACTAAACATTGCCTGATGGGGTgattaaatgtgttttgtgtacaGTAATGTATATTTCATTTACTGTCACGTTACACATGAGTAAAAATCTAGCAGTCCTACTGTATGCAGCAGTTGTATGCAAAAGcttcatttttttccttttgagttGCTGTCTCCTCTGCTCTACTTTACCAAGCAAGTATTTTGACATTGAATACATAGTTGTTGAAACAAGCTCATAGTTATACAACACCGTGCTCATATGTTGACACTTGTGTAAATATAGCAACAGAATAAAAACTGCAGCAACATTTGCTG

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129761 lncRNA upstream 197520 17423065 ~ 17423278 (+) True G96202
TU129700 lncRNA upstream 359768 17257393 ~ 17261030 (+) True G96160
TU129594 lncRNA upstream 742717 16877876 ~ 16878081 (+) True G96088
TU129592 lncRNA upstream 848628 16771969 ~ 16772170 (+) True G96086
TU129582 lncRNA upstream 944221 16676207 ~ 16676577 (+) True G96076
XR_005640265.1 lncRNA downstream 33969 17670680 ~ 17698157 (+) False LOC120565502
XR_005640264.1 lncRNA downstream 33970 17670681 ~ 17694363 (+) False LOC120565502
TU129781 lncRNA downstream 33997 17670708 ~ 17699048 (+) True LOC120565502
TU129849 lncRNA downstream 254941 17891652 ~ 17892398 (+) True G96273
TU129944 lncRNA downstream 949917 18586628 ~ 18586965 (+) True G96341
XM_039811535.1 mRNA upstream 153288 17370102 ~ 17467510 (+) True LOC120565631
XM_039812333.1 mRNA upstream 251708 17344165 ~ 17369090 (+) True kif14
XM_039812402.1 mRNA upstream 277249 17338407 ~ 17343549 (+) True ddx59
XM_039812401.1 mRNA upstream 277378 17337825 ~ 17343420 (+) False ddx59
XM_039811672.1 mRNA upstream 365250 17246779 ~ 17255548 (+) True si:zfos-943e10.1
XM_039812403.1 mRNA downstream 112721 17749432 ~ 17753834 (+) True srek1ip1
XM_039811759.1 mRNA downstream 218920 17855631 ~ 17859411 (+) True nppc
XM_039811629.1 mRNA downstream 227626 17864337 ~ 17875307 (+) True ncl
XM_039811848.1 mRNA downstream 284128 17920839 ~ 17926636 (+) False polr2h
XM_039811847.1 mRNA downstream 285179 17921890 ~ 17926636 (+) False polr2h
XR_005640269.1 other upstream 1279750 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 2704192 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 2706765 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 2999385 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 4238054 13379398 ~ 13382744 (+) True LOC120564964
TU129832 other downstream 218926 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 229837 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 231955 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 234999 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 235567 17872278 ~ 17872411 (+) True LOC120566214

Expression Profile