RNA id: XR_005640171.1



Basic Information


Item Value
RNA id XR_005640171.1
length 770
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120564955
representative False

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17620798 ~ 17636720 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAGCCCAGACAGGATATTAGAATGGACGTTTCCTTCTTCAGTACGCCACAGGCAGGGCCCTCTCCCACTTGTCTTCTCTGTagaaagacacagagaaaaGATAAAGATGTGAGCGGAGCTGACAGGCTGCTGGAGCCACGGTCTCCTTCGCTGTTTGCATCTTGAGTCGGTTTCTGATTTGATTCTGAGAGGATGATTGTGACGGGGGCTTTTTTATTATGCGGACAACAGATGGCAAGGGATGATGCTGATCTCTATGTCCGAGATGAGAAGTGCTGGAAGCATTCCCAGAGTTACGGCAGGCTGAGGCTGCTGGTGATGACATCACCCTGAGACGACCTAATTGGGCAGCTGTTAACCTTCCAGGATTCAATGAGaaacaggtggtgggcccaaaCACGTGCTCTTGGCTCGGaggaaacaccaaaacagtGTAATAGCTGACATGTTGCTAATAATGCACTAAACATTGCCTGATGGGGTgattaaatgtgttttgtgtacaGTAATGTATATTTCATTTACTGTCACGTTACACATGAGTAAAAATCTAGCAGTCCTACTGTATGCAGCAGTTGTATGCAAAAGcttcatttttttccttttgagttGCTGTCTCCTCTGCTCTACTTTACCAAGCAAGTATTTTGACATTGAATACATAGTTGTTGAAACAAGCTCATAGTTATACAACACCGTGCTCATATGTTGACACTTGTGTAAATATAGCAACAGAATAAAAACTGCAGCAACATTTGCTGTCATCCATA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU129761 lncRNA upstream 199706 17423065 ~ 17423278 (+) True G96202
TU129700 lncRNA upstream 361954 17257393 ~ 17261030 (+) True G96160
TU129594 lncRNA upstream 744903 16877876 ~ 16878081 (+) True G96088
TU129592 lncRNA upstream 850814 16771969 ~ 16772170 (+) True G96086
TU129582 lncRNA upstream 946407 16676207 ~ 16676577 (+) True G96076
XR_005640265.1 lncRNA downstream 33960 17670680 ~ 17698157 (+) False LOC120565502
XR_005640264.1 lncRNA downstream 33961 17670681 ~ 17694363 (+) False LOC120565502
TU129781 lncRNA downstream 33988 17670708 ~ 17699048 (+) True LOC120565502
TU129849 lncRNA downstream 254932 17891652 ~ 17892398 (+) True G96273
TU129944 lncRNA downstream 949908 18586628 ~ 18586965 (+) True G96341
XM_039811535.1 mRNA upstream 155474 17370102 ~ 17467510 (+) True LOC120565631
XM_039812333.1 mRNA upstream 253894 17344165 ~ 17369090 (+) True kif14
XM_039812402.1 mRNA upstream 279435 17338407 ~ 17343549 (+) True ddx59
XM_039812401.1 mRNA upstream 279564 17337825 ~ 17343420 (+) False ddx59
XM_039811673.1 mRNA upstream 367436 17246779 ~ 17255548 (+) False si:zfos-943e10.1
XM_039812403.1 mRNA downstream 112712 17749432 ~ 17753834 (+) True srek1ip1
XM_039811759.1 mRNA downstream 218911 17855631 ~ 17859411 (+) True nppc
XM_039811629.1 mRNA downstream 227617 17864337 ~ 17875307 (+) True ncl
XM_039811848.1 mRNA downstream 284119 17920839 ~ 17926636 (+) False polr2h
XM_039811847.1 mRNA downstream 285170 17921890 ~ 17926636 (+) False polr2h
XR_005640269.1 other upstream 1281936 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 2706378 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 2708951 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 3001571 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 4240240 13379398 ~ 13382744 (+) True LOC120564964
TU129832 other downstream 218917 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 229828 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 231946 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 234990 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 235558 17872278 ~ 17872411 (+) True LOC120566214

Expression Profile


XR_005640171.1 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: -0.5 to 0.5.
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XR_005640171.1 Expression in each Bioproject

Bar chart with 2 bars.
XR_005640171.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.