RNA id: TU129956



Basic Information


Item Value
RNA id TU129956
length 232
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G96353
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18613029 ~ 18613260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cgccgtgagaccgggttggaactacacgttgtaaacagccatggcccgcttgcctggtcctcccggtaacgttagcagggttagcatgacggcgttagccaggaccagtcgggatcactttactggctatgtctcaattgtttttgcgagtaaccaactcgggtactctagctatataattcaatgtgagtacacaaatgttgaaatgacataaaatgcccgtccctagtgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU129944 lncRNA upstream 26064 18586628 ~ 18586965 (+) True G96341
TU129849 lncRNA upstream 720631 17891652 ~ 17892398 (+) True G96273
TU129781 lncRNA upstream 913981 17670708 ~ 17699048 (+) True LOC120565502
XR_005640265.1 lncRNA upstream 914872 17670680 ~ 17698157 (+) False LOC120565502
XR_005640264.1 lncRNA upstream 918666 17670681 ~ 17694363 (+) False LOC120565502
TU129966 lncRNA downstream 6298 18619558 ~ 18621342 (+) True G96361
TU129967 lncRNA downstream 6298 18619558 ~ 18621342 (+) False G96361
TU129986 lncRNA downstream 46382 18659642 ~ 18659881 (+) True G96372
TU129984 lncRNA downstream 51317 18664577 ~ 18665113 (+) False nmur1a
TU130030 lncRNA downstream 131256 18744516 ~ 18744857 (+) True G96398
XM_039812053.1 mRNA upstream 671294 17928603 ~ 17941735 (+) True mfsd8l1
XM_039812057.1 mRNA upstream 672678 17928604 ~ 17940351 (+) False mfsd8l1
XM_039812055.1 mRNA upstream 672704 17928604 ~ 17940325 (+) False mfsd8l1
XM_039812054.1 mRNA upstream 672736 17928604 ~ 17940293 (+) False mfsd8l1
XM_039811848.1 mRNA upstream 686393 17920839 ~ 17926636 (+) False polr2h
XM_039810219.1 mRNA downstream 33443 18646703 ~ 18664623 (+) True nmur1a
XM_039812102.1 mRNA downstream 68810 18682070 ~ 18683397 (+) True LOC120565952
XM_039812101.1 mRNA downstream 70938 18684198 ~ 18685748 (+) True LOC120565951
XM_039811541.1 mRNA downstream 75959 18689219 ~ 18701367 (+) True LOC120565634
XM_039811542.1 mRNA downstream 88634 18701894 ~ 18712465 (+) True LOC120565635
XR_005640349.1 other upstream 740618 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 741182 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 744227 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 746348 17866548 ~ 17866681 (+) True LOC120566215
TU129832 other upstream 753877 17855637 ~ 17859152 (+) False nppc
TU130059 other downstream 169340 18782600 ~ 18785636 (+) True G96418
TU130185 other downstream 917507 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 3077637 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3670386 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3872251 22485511 ~ 22488103 (+) False LOC120565764

Expression Profile