RNA id: TU129966


Basic Information

Item Value
RNA id TU129966
length 1574
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G96361
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18619558 ~ 18621342 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCAGGGGGTTATTGTGCTGAACAGTATACATTATTGTTGTGACTGCACATAATGTTTACAGAGTTTTGCAACTGAGAAAAAGAAATTAGTAAAGACTTTATAAAAGAAGGTACATGCAATTTGTAGTTaaggactgttcgttatttatttcaggggccacaggaggagttttgggacctttagtcaaaatagacatgaccctccccacaccagtaataatttttctatgaccctccataacaatttagaaaaaaagGGATGACCCTGCCCCAAAAACGTATCAATACCTGCTGGACAGatttgcgcttggcaaagatatacagattggtcatgccagacataattattttattactattttttaaacaatacaattatcCGTTTCAGCTACCAGGGGGAGCAGTGCTCCCCCGCCCCTCCAATTGCACCTGACTCtccaattgcacctgactgcagtacgcagatcggggttgggctaaatgtgggcggagctaaacgtttgactccgcgCGGGCGCCATCTGGTGGCGGAAATAAGGTAGCACATTCTCAAATGTCAATGCAGCACCTACGGACAgcgattataataataaataaataaatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacacacacacaatggggttgggtttagaaaagaAGAACCAGTTGGTATTAGGAAAataagaacggggaaagcaaatgTGACTCGCGGGAAATGAGCCCtggtctctgggggacgcgagacaacaacggacggttgggttaaggaaaaaaagaacggggaaagcaaacgtgaCTCACGGGAAAcaagccccggtctctgggggacgcaaatCGCGGGAAACGAGCCCTGGCCCCTGGGGGACGCGACTTGCGGGAGCcccggtctctggaggacgCGAATCGCAGGAAACGAGCCACGGCCTCTGGGGGACGCGACTTGCGGGAGccctggtctctggaggacgtGAATCGCGGGAAACAAGCCCTGGTCTCTGGGGGACACGACTTGCGGGAAACAAGACCCGGTCTCTGAGGGGGCACGAATCGCGGGAAATAAGCCCCGgcctctgggggacgcaacttGCGGgagccccggtctctggggaACGGcaATCACGGGAAACGAGTcccggtctctgggggacgcgacTTGCAGGAAAcaagccccggtctctgggggacgcgaaTCGCAGGAAACGAGCCCCGGCCTCTGGGGGACGCGACTTGCGGgagccccggtctctgggggacgccaATCACGGGAAACgagccccggtctctgggggacgcgacTTGCGGGATCCCCGGTCTCTGGAGGAAGAGAATCGCGGGAAACGAGCCCCGGTCTCTGAGGGAGGTGAGACCGCAATGGACGGTTTGGTGAAGGAAAACAACAATGGGGAAAGCAAACGTGACTCGCGGGAAATGAGCTCCGGTCTCTGGGGTgaaagcatggatgtattaagaggtgaaagtcctgtgtttttccgACACACATTCTTCCTCTTCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129956 lncRNA upstream 6298 18613029 ~ 18613260 (+) True G96353
TU129944 lncRNA upstream 32593 18586628 ~ 18586965 (+) True G96341
TU129849 lncRNA upstream 727160 17891652 ~ 17892398 (+) True G96273
TU129781 lncRNA upstream 920510 17670708 ~ 17699048 (+) True LOC120565502
XR_005640265.1 lncRNA upstream 921401 17670680 ~ 17698157 (+) False LOC120565502
TU129986 lncRNA downstream 38300 18659642 ~ 18659881 (+) True G96372
TU129984 lncRNA downstream 43235 18664577 ~ 18665113 (+) False nmur1a
TU130030 lncRNA downstream 123174 18744516 ~ 18744857 (+) True G96398
TU130032 lncRNA downstream 127778 18749120 ~ 18751861 (+) True G96399
TU130057 lncRNA downstream 160852 18782194 ~ 18859921 (+) True G96417
XM_039812053.1 mRNA upstream 677823 17928603 ~ 17941735 (+) True mfsd8l1
XM_039812057.1 mRNA upstream 679207 17928604 ~ 17940351 (+) False mfsd8l1
XM_039812055.1 mRNA upstream 679233 17928604 ~ 17940325 (+) False mfsd8l1
XM_039812054.1 mRNA upstream 679265 17928604 ~ 17940293 (+) False mfsd8l1
XM_039811848.1 mRNA upstream 692922 17920839 ~ 17926636 (+) False polr2h
XM_039810219.1 mRNA downstream 25361 18646703 ~ 18664623 (+) True nmur1a
XM_039812102.1 mRNA downstream 60728 18682070 ~ 18683397 (+) True LOC120565952
XM_039812101.1 mRNA downstream 62856 18684198 ~ 18685748 (+) True LOC120565951
XM_039811541.1 mRNA downstream 67877 18689219 ~ 18701367 (+) True LOC120565634
XM_039811542.1 mRNA downstream 80552 18701894 ~ 18712465 (+) True LOC120565635
XR_005640349.1 other upstream 747147 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 747711 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 750756 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 752877 17866548 ~ 17866681 (+) True LOC120566215
TU129832 other upstream 760406 17855637 ~ 17859152 (+) False nppc
TU130059 other downstream 161258 18782600 ~ 18785636 (+) True G96418
TU130185 other downstream 909425 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 3069555 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3662304 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3864169 22485511 ~ 22488103 (+) False LOC120565764

Expression Profile