RNA id: TU129986


Basic Information

Item Value
RNA id TU129986
length 240
lncRNA type intronic
GC content 0.35
exon number 1
gene id G96372
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18659642 ~ 18659881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atttcaaattaattaatatttgtgaagactaggtgtttcgttagctgtgactgtcccttcaatcctagctacaaatcacggatagttaggttccttttcggcgtaattcgagtatatttacagtttgaatttcgtcacgccacatatacaacatctaactaaatgtcttataaagctaacaacggtgtccgatttcaagttaatgaatttttgtgaattccagaggaattctaagaggag

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129966 lncRNA upstream 38300 18619558 ~ 18621342 (+) True G96361
TU129967 lncRNA upstream 38300 18619558 ~ 18621342 (+) False G96361
TU129956 lncRNA upstream 46382 18613029 ~ 18613260 (+) True G96353
TU129944 lncRNA upstream 72677 18586628 ~ 18586965 (+) True G96341
TU129849 lncRNA upstream 767244 17891652 ~ 17892398 (+) True G96273
TU129984 lncRNA downstream 4696 18664577 ~ 18665113 (+) False nmur1a
TU130030 lncRNA downstream 84635 18744516 ~ 18744857 (+) True G96398
TU130032 lncRNA downstream 89239 18749120 ~ 18751861 (+) True G96399
TU130057 lncRNA downstream 122313 18782194 ~ 18859921 (+) True G96417
TU130082 lncRNA downstream 364402 19024283 ~ 19029464 (+) True G96438
XM_039812053.1 mRNA upstream 717907 17928603 ~ 17941735 (+) True mfsd8l1
XM_039812057.1 mRNA upstream 719291 17928604 ~ 17940351 (+) False mfsd8l1
XM_039812055.1 mRNA upstream 719317 17928604 ~ 17940325 (+) False mfsd8l1
XM_039812054.1 mRNA upstream 719349 17928604 ~ 17940293 (+) False mfsd8l1
XM_039811848.1 mRNA upstream 733006 17920839 ~ 17926636 (+) False polr2h
XM_039812102.1 mRNA downstream 22189 18682070 ~ 18683397 (+) True LOC120565952
XM_039812101.1 mRNA downstream 24317 18684198 ~ 18685748 (+) True LOC120565951
XM_039811541.1 mRNA downstream 29338 18689219 ~ 18701367 (+) True LOC120565634
XM_039811542.1 mRNA downstream 42013 18701894 ~ 18712465 (+) True LOC120565635
XM_039810616.1 mRNA downstream 55873 18715754 ~ 18733910 (+) True LOC120565156
XR_005640349.1 other upstream 787231 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 787795 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 790840 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 792961 17866548 ~ 17866681 (+) True LOC120566215
TU129832 other upstream 800490 17855637 ~ 17859152 (+) False nppc
TU130059 other downstream 122719 18782600 ~ 18785636 (+) True G96418
TU130185 other downstream 870886 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 3031016 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3623765 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3825630 22485511 ~ 22488103 (+) False LOC120565764

Expression Profile