RNA id: TU130030


Basic Information

Item Value
RNA id TU130030
length 307
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G96398
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18744516 ~ 18744857 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTTCCTCTCTCTAACTCGAGTTGTCTACCTTTAGAGGTGGGTCTGCTTCCTTTGACCAACTCAAGTCCTCTCAATCACAATACTTGGTTACATGTCCTGCACAGGGTGTCAGGGTTGGTGAGGGTGTGGACACAAAAGCAGGCAACAGCAACTAAAGACCAAACTATTTGTTCTCCAAGGAATACAAACTGGAAAACTATGACAGAACAAGAGAGGCAGCAAAAGATTTACGACAcacaaactgacacacacatataaatacaCATGGAGCTAATCAGAAGACGAGGCACAGCTGTGAGTGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129984 lncRNA upstream 79403 18664577 ~ 18665113 (+) False nmur1a
TU129986 lncRNA upstream 84635 18659642 ~ 18659881 (+) True G96372
TU129966 lncRNA upstream 123174 18619558 ~ 18621342 (+) True G96361
TU129967 lncRNA upstream 123174 18619558 ~ 18621342 (+) False G96361
TU129956 lncRNA upstream 131256 18613029 ~ 18613260 (+) True G96353
TU130032 lncRNA downstream 4263 18749120 ~ 18751861 (+) True G96399
TU130057 lncRNA downstream 37337 18782194 ~ 18859921 (+) True G96417
TU130082 lncRNA downstream 279426 19024283 ~ 19029464 (+) True G96438
TU130094 lncRNA downstream 311484 19056341 ~ 19057812 (+) True G96445
TU130108 lncRNA downstream 534612 19279469 ~ 19287673 (+) True G96455
XM_039810616.1 mRNA upstream 10606 18715754 ~ 18733910 (+) True LOC120565156
XM_039810620.1 mRNA upstream 10606 18715934 ~ 18733910 (+) False LOC120565156
XM_039810617.1 mRNA upstream 10606 18717299 ~ 18733910 (+) False LOC120565156
XM_039810618.1 mRNA upstream 10606 18717441 ~ 18733910 (+) False LOC120565156
XM_039811542.1 mRNA upstream 32051 18701894 ~ 18712465 (+) True LOC120565635
XM_039812453.1 mRNA downstream 103380 18848237 ~ 18857457 (+) False LOC120566166
XM_039812452.1 mRNA downstream 103386 18848243 ~ 18857894 (+) True LOC120566166
XM_039811543.1 mRNA downstream 167030 18911887 ~ 18917474 (+) True LOC120565637
XM_039812457.1 mRNA downstream 175281 18920138 ~ 18945814 (+) True ppp1r2
XM_039810613.1 mRNA downstream 205343 18950200 ~ 19004281 (+) False LOC120565155
XR_005640349.1 other upstream 872105 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 872669 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 875714 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 877835 17866548 ~ 17866681 (+) True LOC120566215
TU129832 other upstream 885364 17855637 ~ 17859152 (+) False nppc
TU130059 other downstream 37743 18782600 ~ 18785636 (+) True G96418
TU130185 other downstream 785910 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 2946040 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3538789 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3740654 22485511 ~ 22488103 (+) False LOC120565764

Expression Profile