RNA id: TU130059


Basic Information

Item Value
RNA id TU130059
length 2419
RNA type TUCP
GC content 0.43
exon number 2
gene id G96418
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18782600 ~ 18785636 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCTTAATAAAACAGTAATTTATTTTTGACTGAAAACTAAAATTGTCTGAACAGCACATTACAAGGGCATTGTTAAGATATTTTCTCCCAGGCTCAGTGATTACTTTCATACTGTACACTTGGCATGTACACATCTCCTTCAAATGAAAGAACAGAAAGAAATGAGAAAAGAAATAAGCCtgtttgcaaagaaaaaagaaaaaaggaaatcaaAGAGACCATCCTGTAGACAGATGACTGATTGTACAATTACCAAGCATTTTGGTTTGGGTCTAAGCCACAGAGAAAGAAACCAAATCGCCCAACAACCGCAGACGATGGCACAGGAGGCACAAAAGACGTGACAGTACAGGACATCCCATAATATGCTCACACACAACCGACTGGGATCCAGCTTTAAAGTGTGAAAGGTTTTATAGTTTCCATTGTTTTTTGcagatatttattttattttataagtgTTGGTACACTACAATCAAAATCGAAATGCTGCATtcattaaatacattaaaatctgCAATGTAACAAAATCTTTTCTCCGTTATGAAATTCAACAGCATTtacatggggaaaaaaaaatacatgggGCTCCTTTTCTGACTATTGTTTTGTGCTTGAGGCCCTTCCCTCCATCTGACACAAACACCTTgtcattcttttcttttatattcTTACCTCAACTACTTACTCCACCCTCTGCCCATTCTTCTCTTTCTCGTTCATAAATCCTTTCACAGACTGACAACTTCACAAAAAGTAAATGGTGGATAAAAACATGAGGTAAGAAAGTGGTTTGATTATAGATCATGCAGAACATGCAAAACAGCGCAAAAATATAGGGAAAGTGagagcaggaaaaaaaataagtgtgcaTTTAAAAATGGGGGAAGAGACTTACACAGCTTTGCATCTTTGGTTATAAAGTAGGTCAAACAATTTTCACAGCTTTTTATTCCCCTGACCAAACCCCCAAATTAATTTCATCTTTTTTGTTGTGACAAAGAAAGTAAATTTAATAGTTTTCCTTATCCAAACATCCCATCTTAACAACAGGTGTTCCCCTGTACAAACCCTCCATGCTCTTAATACTTTACACTTTACAAAATATACATTCAACCTGGATTTCACCTAATGTAAGCTCGGCTTTAGTGTTAGCACTAtttcatgaaatacattttctattatGGAACTTATTGCCTACTTGTTGCAAGAGAGACTACCAAATGTAATACCTGACAGATTCTAAAATACCAAAAGACCAAAGAGaaaaggttttctttttttttgtttgttttaagtttCTCCATGACATTGTTCATTTACATTATGAAAATAGCagccctgaaataaataaatgaaaatactaAAACTGAACTaatgaaaaaaagtattatGATTCATGTCAAAGTACGGTGGCTCTGAGAAAACAACACAAGCTTTTGTTGCAGCATATAACAACCCGAGGCTCTCGACTCGCTCCACTCAAGCCGAGACGCCCGCCGGCTTCCTCCTCCACTCAGGGACGACCAATCCTTTCCCCCCCTCCCTCGGCTCTCTGGCCTCTTCCAGCCCTGGAGTGATGTTGGGTTGGGGGATACTGGGAGGACAGTCCCTGCTGGATATCACAGGACCCTCATCACGTCACAGGCCCCTCACAGGGTTGCACCGCCCTCTTCCACCACTCGTTGCCCCAACAAATCAATCTCGCTGTGCCCTTTGACCCCCGTCCTCCTGCACAAGAACAGCATGCGGTTTTATGGTGTGCACCGGCTCCCCCCTGCCCCTCCTTTTTCAGCTTTCTTGCAGCCACGGGACAGAATAAGACTTTTTGAGGGGTGGTAAATGTCTTAATAATGTAAAGCCTGGTGGCGGTAACGTGCACACATCGAAGCATGGCTCTTGGTGGCAAACGCAGATGTCGCTGTTGTTGAGGTTTCCTCAAATGGAGCATATTGAACGCAGAGCAGGGCCTTTTGCTTTATGAGGGGGACAGTAGCAGTTGTTCCTGCCCGTGGGAGGTTTGTGTTTGAGCATGTGTACTGAGGGAACGGGGATCACGCAGAGGTGATGTTAGGCTGTTGAGGGACGCTCTGACCCCCCTCGTGGTGAGCCAAGGCGGgggtgttggtggtggtggtgttgttgttgttgttgttgtttgtgacGAGCGGGTATTGCTGTTGCAGCGTCGGCGATGTGCTGCTGCCCTGGTTGAGCTGACTGGACAGCTGGCCGAGCTGATCCGTGTTGGCCAGGGACTTCAGCACGGCATTCTCGCGCTCCAACACCGAGTTCCTCTCGTACAGCTCCTTGATCTGCTCCTTCAACACCTCCACCTCCTCACGGACAGCATACATCAGGTGGCTCTTCACCAAGTCCCTTGCTCAATCTTGTTATCGATGGCGACAACACTGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130032 lncRNA upstream 30739 18749120 ~ 18751861 (+) True G96399
TU130030 lncRNA upstream 37743 18744516 ~ 18744857 (+) True G96398
TU129984 lncRNA upstream 117487 18664577 ~ 18665113 (+) False nmur1a
TU129986 lncRNA upstream 122719 18659642 ~ 18659881 (+) True G96372
TU129966 lncRNA upstream 161258 18619558 ~ 18621342 (+) True G96361
TU130082 lncRNA downstream 238647 19024283 ~ 19029464 (+) True G96438
TU130094 lncRNA downstream 270705 19056341 ~ 19057812 (+) True G96445
TU130108 lncRNA downstream 493833 19279469 ~ 19287673 (+) True G96455
TU130147 lncRNA downstream 546056 19331692 ~ 19387203 (+) True G96488
TU130149 lncRNA downstream 548540 19334176 ~ 19334915 (+) True G96489
XM_039810616.1 mRNA upstream 48690 18715754 ~ 18733910 (+) True LOC120565156
XM_039810620.1 mRNA upstream 48690 18715934 ~ 18733910 (+) False LOC120565156
XM_039810617.1 mRNA upstream 48690 18717299 ~ 18733910 (+) False LOC120565156
XM_039810618.1 mRNA upstream 48690 18717441 ~ 18733910 (+) False LOC120565156
XM_039811542.1 mRNA upstream 70135 18701894 ~ 18712465 (+) True LOC120565635
XM_039812453.1 mRNA downstream 62601 18848237 ~ 18857457 (+) False LOC120566166
XM_039812452.1 mRNA downstream 62607 18848243 ~ 18857894 (+) True LOC120566166
XM_039811543.1 mRNA downstream 126251 18911887 ~ 18917474 (+) True LOC120565637
XM_039812457.1 mRNA downstream 134502 18920138 ~ 18945814 (+) True ppp1r2
XM_039810613.1 mRNA downstream 164564 18950200 ~ 19004281 (+) False LOC120565155
XR_005640349.1 other upstream 910189 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 910753 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 913798 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 915919 17866548 ~ 17866681 (+) True LOC120566215
TU129832 other upstream 923448 17855637 ~ 17859152 (+) False nppc
TU130185 other downstream 745131 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 2905261 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3498010 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3699875 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 3707321 22492957 ~ 22501015 (+) False soat1

Expression Profile