RNA id: TU130082


Basic Information

Item Value
RNA id TU130082
length 532
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G96438
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19024283 ~ 19029464 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCAGGTCTCGGGCATGTTGAGGACTTTGAGCTGAGCCGGCATTGCTCTGGCCGGGTTCTCCAGGAGCTGGAAATTTGGCTCagcctctttcttcttctctttctccttttcttcatccttcttctccttctccttctccttctcctgtttctccttctctttctccgcCTCCTGGACCTCCACTtccatcttctcctcctccttttctttcttttccttctccttcttcttggcTTTGGCTGTGATGGAGAGAACAGCAGTGGATACcttctccttctccttctctttgGGAACCTCCAGAGCTGGTGGGTAGGCGAAGGTGGAGGGCTTACAGTTAGAACGATACTGAACCTTGGGCATCTTGAGGTCCTTGTTGAGGCCAATTATAGCGGTTGGTGTGAAGGCCAATGACAGGAAGTGGGAAAGAgggaaccagaaccagaactgAGTGAAGACCAGCAGGCCGACCAATGTTGGCATGTGAGTGTGACCCGTCCTGGACTGTAGAGAGATGGTCACATTACGTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130057 lncRNA upstream 164362 18782194 ~ 18859921 (+) True G96417
TU130032 lncRNA upstream 272422 18749120 ~ 18751861 (+) True G96399
TU130030 lncRNA upstream 279426 18744516 ~ 18744857 (+) True G96398
TU129984 lncRNA upstream 359170 18664577 ~ 18665113 (+) False nmur1a
TU129986 lncRNA upstream 364402 18659642 ~ 18659881 (+) True G96372
TU130094 lncRNA downstream 26877 19056341 ~ 19057812 (+) True G96445
TU130108 lncRNA downstream 250005 19279469 ~ 19287673 (+) True G96455
TU130147 lncRNA downstream 302228 19331692 ~ 19387203 (+) True G96488
TU130149 lncRNA downstream 304712 19334176 ~ 19334915 (+) True G96489
XR_005640283.1 lncRNA downstream 357768 19387232 ~ 19510810 (+) False LOC120565771
XM_039810613.1 mRNA upstream 20002 18950200 ~ 19004281 (+) False LOC120565155
XM_039810608.1 mRNA upstream 20002 18950200 ~ 19004281 (+) False LOC120565155
XM_039810614.1 mRNA upstream 20002 18950200 ~ 19004281 (+) False LOC120565155
XM_039810607.1 mRNA upstream 20002 18950200 ~ 19004281 (+) False LOC120565155
XM_039810612.1 mRNA upstream 20002 18950200 ~ 19004281 (+) False LOC120565155
XM_039810840.1 mRNA downstream 14546 19044010 ~ 19051968 (+) False htr2b
XM_039810842.1 mRNA downstream 14546 19044010 ~ 19051968 (+) False htr2b
XM_039810841.1 mRNA downstream 14546 19044010 ~ 19051968 (+) False htr2b
XM_039810839.1 mRNA downstream 14546 19044010 ~ 19051968 (+) True htr2b
XM_039810843.1 mRNA downstream 14546 19044010 ~ 19051968 (+) False htr2b
TU130059 other upstream 238647 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 1151872 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 1152436 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 1155481 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 1157602 17866548 ~ 17866681 (+) True LOC120566215
TU130185 other downstream 501303 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 2661433 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3254182 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3456047 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 3463493 22492957 ~ 22501015 (+) False soat1

Expression Profile