RNA id: TU130149


Basic Information

Item Value
RNA id TU130149
length 526
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G96489
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19334176 ~ 19334915 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCACTGTCAGTTGTCCTTCCTTACACCTGGGCCCGTTATGAACAGCCTTAAACATGTCAAGCAGCTCATCCTTATGCAGCAGACGGCTGGAGTTGTAGAAGGAGGGTTTATTGGAGGAACCAACAGCCCCGTCCTCTTCGCCATCTTCTGAGCAGGTGTACCAGTCCTCCTCCTCTACGGTTATCTTTTCCTGCTGCTCTTCGTCTGTACCACTCTCTTCTccctcttcatcttcatcttcctTCTCCTTCGCCACCTTTACTTCCTCCTCTCCAGCTGCTCCTTTTTGGGTCAAGTCATTGTCTGGCTGTCCTTCCTCTTCCGGGTCACTCTCTCCACACTCTGGATCCTCCACTTCCATGCCCTTTTCCTCTGCCTCCAGTCGGTCTCTCTCAGCCAGCGCAGACCAGAAAACCGCCCTAAGGCCCTCTTTTTGGAAGTATCTGGCCCAGGACCGCCGCTGCTCCCTGGTCAGCAGGTCTGCCTTATTTAACAACAGCATGTTCACCTTATGCTCCGACGCT

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130108 lncRNA upstream 46503 19279469 ~ 19287673 (+) True G96455
TU130094 lncRNA upstream 276364 19056341 ~ 19057812 (+) True G96445
TU130082 lncRNA upstream 304712 19024283 ~ 19029464 (+) True G96438
TU130057 lncRNA upstream 474255 18782194 ~ 18859921 (+) True G96417
TU130032 lncRNA upstream 582315 18749120 ~ 18751861 (+) True G96399
XR_005640283.1 lncRNA downstream 52317 19387232 ~ 19510810 (+) False LOC120565771
TU130157 lncRNA downstream 153175 19488090 ~ 19511208 (+) True LOC120565771
TU130324 lncRNA downstream 342253 19677168 ~ 19683076 (+) True G96613
TU130321 lncRNA downstream 349235 19684150 ~ 19685085 (+) True G96610
TU130327 lncRNA downstream 416205 19751120 ~ 19751372 (+) True G96616
XM_039810840.1 mRNA upstream 282208 19044010 ~ 19051968 (+) False htr2b
XM_039811429.1 mRNA downstream 3951 19338866 ~ 19341056 (+) True fam43a
XM_039811787.1 mRNA downstream 186027 19520942 ~ 19529494 (+) False LOC120565772
XM_039811788.1 mRNA downstream 186030 19520945 ~ 19529494 (+) True LOC120565772
XM_039811789.1 mRNA downstream 186030 19520945 ~ 19529494 (+) False LOC120565772
XM_039811659.1 mRNA downstream 239940 19574855 ~ 19586645 (+) True cth
TU130059 other upstream 548540 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 1461765 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 1462329 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 1465374 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 1467495 17866548 ~ 17866681 (+) True LOC120566215
TU130185 other downstream 195852 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 2355982 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 2948731 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3150596 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 3158042 22492957 ~ 22501015 (+) False soat1

Expression Profile