RNA id: TU130157


Basic Information

Item Value
RNA id TU130157
length 1492
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC120565771
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19387232 ~ 19511208 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAATTTTATTAGAAGGAATGATCACATTCATTGGTCCTTTACAGATAATCATCCTGTCTGGGTCCTTGAATGCACCAATATGAAGAATTTGCAAATGTCCCACTGCATTACAACATAATTGTGTAGTGacgaaaaatacaaaataaagggCTCACTGTGATGCATTACTAATCTCAAAAAATGTTTAGTCTCTGCCATCATTATAATGCACTGGAAGCAATGGAAACCAATTGCTCCCTAAAGAGTAGAAAATCAACCAAAaaactacaaataaaaaatgtgttttgaagTTGTAAAGTGCAATGAGGGAACAGCGTTTACTCTGATTCAACGGTATGGATACTAAAGTCTGTTCTGAAAGAGCCAAAATATTGACGAGCTTCAAGGTGAATTCAAGGAAATCGTATTGATTTGGGATGTTTATTTGACTCCACTGGTAGTGCAGGACATTCAGCTGCTTTACTCTcactgtgtgtacgtgtgtgttaaAGTGTGAATCACCTCAGACAATTTCTTGACTGATGAATATTGAGTGTTGACATTTCTTTGAATCCGAAGGGCAGTTCAGTGAGCACAGCAAGAACTCAAAAGTGGGTCAGTGTCTGCACGGCCTCTTCATTTAACTTGTGTTTGGCCTGAGCTAGACTGCAAATGCAACAGCCATCATTGTTAATTATTATGTCCCTGACCCCTCCTACCACTCTCTTATGTAATGTTTCCCCCTTGTTTTTCTACCTGCAGAAAGACATGTTTAAAAGTGTGGCAGTGTGTTATGCCCTGCGCTCATGTCGCCCCGGAAAGATGGAGAATTACCCCCCTCCTGTTCTTCTACAAGCCACAGAGGCGGGAAGTAAACGTACCAGATTAGCCTTCACCTGGTGTGGTGCTGTAGGAAGATAAGGCGACGCAGGATAAACTTGGGCCACTGATGGAAAACTTGAGGTGCTGGGAATCAGAGTGAGCAGATGGAGGGAAGCGGAAAAAGGCATGATGTGATGCATGGcaacagagaggaagaagatgGCATCGCTGTAGTAAGCCCCAGAGCCAGCGCTGAAGTGCTTCTGCATGGCCTCCACAATAGGGAATAGCTTCTGTGTGAGAGCCACCACGTCATGGAACAACACCTGCAGATCAACATAGTGGAATCATGTTAGTACAACAAAATACCAACTGTAGTAGAGCTGTGAAATATTAGGAACCACTAAAGATTTGTATGAGCCTATTGGTAGGTACATATAAATCTCTGATTTGACCATAAACATGGAAAGTGCACTACAGACAACTACTTCTCTTGTGCAACCTCTCAAATAAAGCTTTGACTGTCCACAATTAGCAAGAGAACCATGTTGTCttaagaaagagaaaaatagaTATAAGGGTaaacaacaaatgttttttgtatcacACTAGCCTTAAAAGTTATTATGATATATCATATGATGGTCAGACGCTCTTATTGATCTACAACCCAAATTCCATTAAACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130147 lncRNA upstream 100887 19331692 ~ 19387203 (+) True G96488
TU130149 lncRNA upstream 153175 19334176 ~ 19334915 (+) True G96489
TU130108 lncRNA upstream 200417 19279469 ~ 19287673 (+) True G96455
TU130094 lncRNA upstream 430278 19056341 ~ 19057812 (+) True G96445
TU130082 lncRNA upstream 458626 19024283 ~ 19029464 (+) True G96438
TU130324 lncRNA downstream 165960 19677168 ~ 19683076 (+) True G96613
TU130321 lncRNA downstream 172942 19684150 ~ 19685085 (+) True G96610
TU130327 lncRNA downstream 239912 19751120 ~ 19751372 (+) True G96616
TU130372 lncRNA downstream 489620 20000828 ~ 20002125 (+) True G96648
XR_005640277.1 lncRNA downstream 535810 20047018 ~ 20047372 (+) True LOC120565691
XM_039811429.1 mRNA upstream 147034 19338866 ~ 19341056 (+) True fam43a
XM_039810842.1 mRNA upstream 436122 19044010 ~ 19051968 (+) False htr2b
XM_039811787.1 mRNA downstream 9734 19520942 ~ 19529494 (+) False LOC120565772
XM_039811788.1 mRNA downstream 9737 19520945 ~ 19529494 (+) True LOC120565772
XM_039811789.1 mRNA downstream 9737 19520945 ~ 19529494 (+) False LOC120565772
XM_039811659.1 mRNA downstream 63647 19574855 ~ 19586645 (+) True cth
XM_039810777.1 mRNA downstream 645202 20156410 ~ 20256593 (+) False adgrl2a
TU130059 other upstream 702454 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 1615679 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 1616243 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 1619288 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 1621409 17866548 ~ 17866681 (+) True LOC120566215
TU130185 other downstream 19559 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 2179689 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 2772438 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 2974303 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 2981749 22492957 ~ 22501015 (+) False soat1

Expression Profile