RNA id: TU130327


Basic Information

Item Value
RNA id TU130327
length 253
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G96616
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19751120 ~ 19751372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgtatttgatcttttaaaacccgtcagatcgtttgttctatgttttgatttgatttcacgtGACAGACGCAACCGTTCATAAACGACTCATCACTATGGCAACATAACAAACAGGTTAACAAACTTTCTTTTagtcttcagtttttcttaattctctcaataccaccatggagacaaaaagaaaaaagtatgatttgacatttaagctGACAGTTGTCAAATTTGCCGAACAAAATTCGGGAGAAGCAGCG

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130321 lncRNA upstream 66035 19684150 ~ 19685085 (+) True G96610
TU130324 lncRNA upstream 68044 19677168 ~ 19683076 (+) True G96613
TU130157 lncRNA upstream 239912 19488090 ~ 19511208 (+) True LOC120565771
XR_005640283.1 lncRNA upstream 240310 19387232 ~ 19510810 (+) False LOC120565771
TU130147 lncRNA upstream 363917 19331692 ~ 19387203 (+) True G96488
TU130372 lncRNA downstream 249456 20000828 ~ 20002125 (+) True G96648
XR_005640277.1 lncRNA downstream 295646 20047018 ~ 20047372 (+) True LOC120565691
TU130377 lncRNA downstream 296507 20047879 ~ 20049217 (+) True G96653
XR_005640207.1 lncRNA downstream 515279 20266651 ~ 20289381 (+) True LOC120565226
XR_005640266.1 lncRNA downstream 717181 20468553 ~ 20470747 (+) True LOC120565515
XM_039811659.1 mRNA upstream 164475 19574855 ~ 19586645 (+) True cth
XM_039811787.1 mRNA upstream 221626 19520942 ~ 19529494 (+) False LOC120565772
XM_039811788.1 mRNA upstream 221626 19520945 ~ 19529494 (+) True LOC120565772
XM_039811789.1 mRNA upstream 221626 19520945 ~ 19529494 (+) False LOC120565772
XM_039811429.1 mRNA upstream 410064 19338866 ~ 19341056 (+) True fam43a
XM_039810777.1 mRNA downstream 405038 20156410 ~ 20256593 (+) False adgrl2a
XM_039810779.1 mRNA downstream 405038 20156410 ~ 20256593 (+) False adgrl2a
XM_039810792.1 mRNA downstream 405038 20156410 ~ 20256593 (+) False adgrl2a
XM_039810794.1 mRNA downstream 405038 20156410 ~ 20256593 (+) False adgrl2a
XM_039810785.1 mRNA downstream 405038 20156410 ~ 20256593 (+) False adgrl2a
TU130185 other upstream 219443 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 965484 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 1878709 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 1879273 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 1882318 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 1939525 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 2532274 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 2734139 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 2741585 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 2820687 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile