RNA id: TU130468


Basic Information

Item Value
RNA id TU130468
length 351
lncRNA type sense_over
GC content 0.48
exon number 2
gene id prkacba
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20548999 ~ 20564824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCACAAAACGACAGCAGGCAGAGGTGAAAAGTCTGGATCATGTTTTCATTCCAGCGTAGGCATACTTGAACGACAAAGGACATTGTAAATAAAGATCAACAGGGCGGTTAGCAGAGCACGTCGAGGTTCTGTACACAAAGAGAAGACATTGATGTTGTTGTTAGCCAACCAGCTAGCACAAGCTGAAAGCTGAAATTTGTTAGCTAGCTGACGGAGGACCCTGTTAGCTAACCGCCACCATCATCGCTCCTAGCCAGCTGTGCATCGCCCTGTCTTCCTACGATGGGAAACGCAGCAACTGCCAAGAAAGGCAATGAGCAAGAAAGCGTGAAAGAGTTCTTAGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130455 lncRNA upstream 63144 20474807 ~ 20485886 (+) True G96692
XR_005640266.1 lncRNA upstream 78283 20468553 ~ 20470747 (+) True LOC120565515
XR_005640207.1 lncRNA upstream 259649 20266651 ~ 20289381 (+) True LOC120565226
TU130377 lncRNA upstream 499813 20047879 ~ 20049217 (+) True G96653
XR_005640277.1 lncRNA upstream 501658 20047018 ~ 20047372 (+) True LOC120565691
TU130520 lncRNA downstream 61565 20614932 ~ 20615202 (+) True G96742
TU130542 lncRNA downstream 118299 20671666 ~ 20674195 (+) True G96753
TU130543 lncRNA downstream 118299 20671666 ~ 20673633 (+) False G96753
TU130545 lncRNA downstream 120890 20674257 ~ 20676737 (+) True G96754
TU130547 lncRNA downstream 120890 20674257 ~ 20675129 (+) False G96754
XM_039810778.1 mRNA upstream 292436 20160984 ~ 20256594 (+) True adgrl2a
XM_039810788.1 mRNA upstream 294130 20176445 ~ 20254900 (+) False adgrl2a
XM_039810806.1 mRNA upstream 294876 20156410 ~ 20254154 (+) False adgrl2a
XM_039812396.1 mRNA downstream 11608 20564975 ~ 20568112 (+) False samd13
XM_039812397.1 mRNA downstream 12169 20565536 ~ 20568112 (+) True samd13
XM_039810265.1 mRNA downstream 23156 20576523 ~ 20582264 (+) True dnase2b
XM_039811113.1 mRNA downstream 29139 20582506 ~ 20587615 (+) False LOC120565357
XM_039811110.1 mRNA downstream 29147 20582514 ~ 20587615 (+) True LOC120565357
TU130185 other upstream 1017353 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 1763394 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 2676619 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 2677183 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 2680228 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 1137530 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 1730279 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 1932144 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 1939590 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 2018692 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile