RNA id: TU130926


Basic Information

Item Value
RNA id TU130926
length 395
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G97011
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21372941 ~ 21373533 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctaatGATGCTTTAGTTTGCTGGTAAACATTTCTCAGGTATGGATGGTTGGCTTGTGCTTTACTTCGCTCCTTCTGTATAAGTGCATATCATACCggtttttctgtttctcttttttgtgGTAGTTTCTTCTTGGAAACTCTCTTTTCGGCTCGCCTTAACTCTGTGGTTGTGTCAGCTGCTTTAATGAGTTTCTGCAGATCCTGGGCCTTCTTCTCacgctctctctttcttgtcTCAATCTTCCTTAGCTCCTGAATAAGATATTCCTCTTCTGCCACTTGTTCAGGTGTGCGATTAAAGAGCTTGTCCAGTTGCTCTTTACGGCGCCTTTCATGGCCGGCATCAAAGATGTAGATCTTGGGCTCCGTCCCTGTAGCTGCACGCACCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130868 lncRNA upstream 58421 21310912 ~ 21314520 (+) True G96963
TU130765 lncRNA upstream 198634 21127063 ~ 21174307 (+) False G96906
TU130764 lncRNA upstream 198634 21171266 ~ 21174307 (+) True G96906
TU130756 lncRNA upstream 310637 21061672 ~ 21062304 (+) True G96898
TU130716 lncRNA upstream 363631 21005731 ~ 21009310 (+) True G96871
TU130941 lncRNA downstream 37830 21411363 ~ 21439395 (+) False LOC120565275
TU130979 lncRNA downstream 181420 21554953 ~ 21557731 (+) True lsm7
TU130980 lncRNA downstream 181420 21554953 ~ 21557731 (+) False lsm7
TU131003 lncRNA downstream 285017 21658550 ~ 21676349 (+) True G97064
TU131004 lncRNA downstream 285017 21658550 ~ 21676349 (+) False G97064
XM_039810719.1 mRNA upstream 64372 21260927 ~ 21308569 (+) False obscna
XM_039810553.1 mRNA downstream 2899 21376432 ~ 21384204 (+) False hnrnpm
XM_039810552.1 mRNA downstream 2901 21376434 ~ 21384204 (+) True hnrnpm
XM_039810554.1 mRNA downstream 3933 21377466 ~ 21384204 (+) False hnrnpm
XM_039810556.1 mRNA downstream 10989 21384522 ~ 21392514 (+) True timm44
XM_039810555.1 mRNA downstream 11006 21384539 ~ 21392514 (+) False timm44
TU130185 other upstream 1841264 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 2587305 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 3500530 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 3501094 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 3504139 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 317364 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 910113 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 1111978 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 1119424 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 1198526 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile