RNA id: TU131315


Basic Information

Item Value
RNA id TU131315
length 2945
RNA type TUCP
GC content 0.42
exon number 2
gene id G97321
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22283646 ~ 22287272 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACACATTTGAGACAGTACAAATGGGATCAAGGTGTAGCCCTTCTCTGTAAATTCATGTTTTACGTTAAAAAGAAAGTGTGATTGATGGGCCTTCATCTAGACGTACCTCAACAAATGACAGATTGCAGCTGCAGATCAAAAGCAAGGAGTccttatcaaaaataattttattgatTCAGACAGAAGTGAAGAagcaaactgaaaaaaacagtgtttttgAGATGACCAGCCAAGGCTTTACATCGTGGACACAAGCCAAAAACAAATCCTGCTTATTCTAAAACCTTGTCCAGTGTGAACATATGCATCGCTCCACAGCACTTCATAAACAACCAGAGTAGCTGTTATGTGGACTCAGCAGTGTGATGtaatatttaacccttgtgttgtcttcccattgGCCACGcaaagttttgtttttctgggttaaAATTTAAACCGTAAGAagcttttgtcgcttttcccggtgttttttttaaatgtttgttcttcttttttttaccacatttttgaagcttttcccgacgttttgtcacttttccggAGTACTTTGTCGATTTTTTCTgcgtttgacatttttgttcttgttttttccgacatttttgtcactttgttcaacgttcttttatcaattcttttcttcaaatgttatcaaatttaataaaacacccacattcaatgaaagtagtgaactgatcattcatcatacttgtgaagagcgttccACGTTattatttttgacaatttggttgaaagaaacccacatttctgatatagaaactttttgaaaaaaatgggtcaaatatgacccgaggacaacacgagggttaaagaCACGACATAACGCTGAGTGTAATGTACAGTAAGACACCTCAAAGGAGCTGAACAACAAAAGGCTGATCCGCTCTTCTCTGGTAAAAGTTAGTTTGGACCGGCTGGTCCAGTCACAGTATTCAAACAATATGATGCAGCTGTCAGGCAGACAACAAACTTTAAAAACCCACTATGCATTTTTCGGGACTGGGGCGGTTTTTAAAACATCtgattattaaatgaaatgcagaaacatttaatttattacCTGATACATTGACTTGATAAACACAAAGATCTCAGTGATTGATTGGAGGGAAAACAGATCGTCTATAATTTAAGATACAACagaatgttttttaaatcaaagaatAACCTATTTGAGTATTAAGTTCAAAtgattcaaatattttttacatgtaaatatataaaaaattgtgactgaaataaaaacatattttggttaTTCTGATCATAGTACACAGGGAAGTAGTGTAGGAGGTCTTTGTCCTACTGTaagatataaaaaatataacaaaagaaaaatcacacaaacaaaatgttaCAAATGTCCATAACTCAGTAAAGCAACACAAATCACGTATTAGTTgcatttacaaataaaaaaaaaaaatcatctcatATTGGGTTTAATTTTATCCTTCATAAGTGGTCAAactaaaaaatcaaaaaatggATTATCCTTAACTCAGGCACAaaccacaaacagaaacacacttaTGGAAATATATATCTATAGGCACATATTTTCCACAGTTGAGGTGATGCCTAATAAAGCTCTGGAAGACAGATTAAGTGTAATTTTAAAAAGGACCCCCCGCCCCAATTTTCAAAGATTTGGAAGGTAGTCTGCTAATTTTCCCTCCTCTCCAGTTAGACATAACCCATCCACAACATTCAGGGTAAAACACACTGTTGCATACTTTGGCTGTAGGTAACAGTTAAGTGGACCACCGAAGATCGCCTTAATCTTGACACATCCCCTAGCACTAACCCCGACCTTAGCCTACATGAAGCTAATTAACGTTAATCATTGCGGACTCAGCTCCAATTTGGATACACTCTGGTTCAGGGCAGGCCTACTTTAGCCCGCCGTAGTCTGAGGCGGGTCTTGAAGAAAATGTACATGGACAGAAGACACATGGAGGACAGGAAATAAAGGATGACACACAGGCTGATGTCCACTTTGGAGAAGCCAATGCTCAGCACAGACATCCAGCGTCCCCTGTGGCTCAACTCTGCCTCCTCAACAAAGTACTGGCCGGTCAGTTCTCGCTTCTGCAGCCGCTTTCTCTGCCGCCCCACATCTTGCTCAAAGTCTGCTTCCATAGGCTGCAGGCCCACCATCCCCAGCCCTGCATCCAGCTCCATGCCGAGCCCAAACACAGGCCAGGGCTCCTGCTCCTCCTTCCTCTGCAGGGTGCGTTGTTTGACCCGCAGCGCCTTGGCCTTGTAGTGCTGGTTGACAAATGAGTCGAGATCCACGATGTCCTCCTGCAGCTCTCGCATCCTCATCCCCACAATGCTCGGCTTCCTGTGGGCCTGCCGCCGGCCTCGACCCACCTCCATTTCAGGCTTGGCCCAGGGGGTTGTCTCAGATGTCTTACCCTCCATcccatctgctgctgctgctgctcgtcCTTCCccaccttcctcctcttcatcctgtggcccctcttcctcctcctcctcttcctcctcttcttccatgGCGGGTTGCGATGGCAGAGGATGTGCCATTGAGTCCAAGGCCTCCCTGGCTTTCCTCTCTACACGTTTCTGAGCTTCTAAAGCTTGCTGCTGACTCGCGTGTTTTTCCCTCTGTTTTGCCAGGATCTGACTTTCATCTTCGAGGTAGTCTGACAGGGCTGTGAGGATACTGCTGGATGAGAAGTGGGACAGGAGGAAGGGGAGAACCTGCTCCTTGCTCCACTTGTGCTCCCCGTTTTCCTTCACCGTATGGCAGGCTGGACACATTTCTGGTGGAGGCCACTGGATCTTTGGGAAGTTGGGGTCTTCACTCAAATCACCTGCAGAGATGAATGCAAAAGTAGGGTTAATGTAATGTATTGTACAACAGAGTCCTGATCACGTTAGAACTGAGCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131289 lncRNA upstream 109253 22158057 ~ 22174393 (+) True G97297
TU131286 lncRNA upstream 125688 22156111 ~ 22157958 (+) True G97295
TU131249 lncRNA upstream 190272 22091389 ~ 22093374 (+) True G97263
TU131159 lncRNA upstream 247972 22033797 ~ 22035674 (+) True G97190
XR_005640290.1 lncRNA upstream 276293 22005775 ~ 22007353 (+) True LOC120565815
TU131330 lncRNA downstream 26376 22313648 ~ 22316358 (+) True G97335
TU131333 lncRNA downstream 35220 22322492 ~ 22322855 (+) True G97338
TU131429 lncRNA downstream 284482 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA downstream 284523 22571795 ~ 22576548 (+) True LOC120566218
TU131439 lncRNA downstream 307224 22594496 ~ 22595277 (+) False G97410
XM_039812025.1 mRNA upstream 24535 22229405 ~ 22259111 (+) False acbd6
XM_039812024.1 mRNA upstream 24535 22229406 ~ 22259111 (+) True acbd6
XM_039812015.1 mRNA upstream 129313 22134681 ~ 22154333 (+) True sin3b
XM_039812016.1 mRNA upstream 129313 22134681 ~ 22154333 (+) False sin3b
XM_039812017.1 mRNA upstream 149309 22124524 ~ 22134337 (+) True haus5
XM_039810182.1 mRNA downstream 73259 22360531 ~ 22453997 (+) True LOC120564914
XM_039810184.1 mRNA downstream 171189 22458461 ~ 22485160 (+) True si:dkey-21p1.3
XM_039811777.1 mRNA downstream 198239 22485511 ~ 22491235 (+) True LOC120565764
XM_039812090.1 mRNA downstream 205685 22492957 ~ 22501015 (+) True soat1
XM_039812089.1 mRNA downstream 205685 22492957 ~ 22501015 (+) False soat1
TU131036 other upstream 501646 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2751969 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3498010 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4411235 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4411799 17871710 ~ 17871847 (+) True LOC120566229
XR_005640282.1 other downstream 198239 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 205685 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 284787 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 285197 22572469 ~ 22572551 (+) True LOC120566227
XR_005640356.1 other downstream 285451 22572723 ~ 22572804 (+) True LOC120566222

Expression Profile