RNA id: TU131330


Basic Information

Item Value
RNA id TU131330
length 2711
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G97335
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22313648 ~ 22316358 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAATTTCAAAGGTcatttaatgttaacaaatatatatatttgcacatATTTGCAAAGTAAACAGTGTTTATGTTACAACAATCGTTCAGGTTACAGTAACCGTGGGTCAGATAGGATAGACAGTATATTTACACCCATAAAAGAATTGTACAAGTCTCCAGTGCACTTGGCGCACTCACAAcacattattataaatattcataaacatttcaaaagatGAAATGGGAAATCTAGTCCGACTAGATTTATTTGATAATCAAATGTTGTGCCTACCTTTATAATTCAGTTAATAAGATCAAACTCTTTTAAAGGTGAATTTGCTTTATCTCCCTGTGAAGAAAACTGACCTCAGACCAGCAGATAGAAAGCAACTCTGCCCTGaaccaaacagcttcttgttgaTTTAGTTTAtctacagactacagaaaaaGTCTAAGCTGTTTGGTCCATACCTATAAAGCAATGCATAAGACCAAGTACTGCATAGTTACAGAAGGGAACTTGACTTCCTCCCACACACAATCAATTCAAGAGGACAATCCTAGAGGGTTTGTAATACAGCCTTGCAGAAAGTCTTTCTAAAGTActtatcatgtcaacattacaGTTACATATGCCTATAGACCAGACATACAAGTCATACAGCGTGGAGAGGTTGGTGTCAAATGTTTTTGGTCTTTTCTACATTATATAATTTACAGTTTTAACGTACACTTAGCATCTTTTAAAACATtgacagtagaaaaaaaaaaaaaaaaaaagactcagtTTAAGGTCACTTTAGATCCAGTCAGTGAAGATTAAGAAGTGGTCACACATGCTATGAGTTTGTACAGTTTCTTGGATCAAAGCAGCACGGACAGTGAAGGCTAAAATAAGCCCTTGGATACAGTCCTACGTGCTCAGTCTCATCTCTATAACTCGCACTGTGTGCGTTCGTGTCAACAATCTAGTTCCTGATACAGTTCGTTAATAAAATGACTCAACTGTGTCTATATGCACAGATGGTGGGGTGATGTAGACAAGCAGGTAACATTTAGAGTGAGTCAGCGATTCTGTTACCTCATAGGACACATTTCCTCAGGCAAATGAGAAACATCTGAAAaatgaggtttaaaaaaaaccctTCCTCAACTATGCTTCAATACAGAAAGATTGATAAGGCAGAAAATTAAGTATTGGCCAAACTGGTTAGAAGGAAGAGCAGCCGTTTAAGGATCATTTAGAAAAGAGTGGAAAGAGACATTCAAATAAAATAGGTCCAAAGGATGTTGAGACATGAACAAAGTTTGTTATAAATCTACAACTCAACTTAAAGAGGCACTTAAACTGAATGTTGAGAAGACTACCCACTGTTGTCTCACTACAGCGACAGGCTACATTCTGACGGCTGCTTTGAACTTGCCGATTGCTGTGAATCCAAATTATTCACAACAGCAAGAGAAGCATATAATCATGCTGCTACACGACTCGGATGTTTTTTGGGCAAATGTTCAGCTGGCAACCTTTACCAGGACAACTGATGAAAAAACCAAACAACCACAGGTGTTGTCTCTCAGGTCATAgatggtaaatggactgtagGATAAGTAAGGCTCAAATCCAGCATTTCAGTTCTGTCCTATGATGggattcaaaatatatcaagtCAGGCCTACTGCCAGTCTTTTGCATCCCACTTGCATGCTATATACTcattgtttggtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacaagcATTTTGTTTGCTGGTTGTATGAGATGTTTTCAAACTATTAACATTAGTAAAAacagtgtatacagtatgtagtacGAAAGTGGGACACAGTGATTGTGTTAACCAGCTGCACAGTTGTGGCCACAATAAAAGTCATACAGAACACTTTAAATTATTCATATACACTACAATGTTTAAATATTACAACAGTTTTCTCCCCCATGTTCTTTTTCTGGTTCAATAGTATTCTTTCAACCTCCTACATAATATATTGTCGTGTTCACATTCCCATTTCTGTTTGTGCTTTTTTACAATTTCATTAGATGTAAAAATCTGTTCTCTATATATGTTGACAAGATCATTTACAATTCAAAATGTTCCTTACTCCTCTAATCAACCATTTTCAcgcaataaataatataattatggAGACAAAATGTTTCATACAATATCTGATCTCAGCGATGCTCCAATACAGCACAGCCTGACAATATTTAATCTGTGACAAATTTCTATTGTTTTATCGCTCCCCCAGCACATTGGATTTAAAATTCAACAATGATTATAAAGTTAAAGTGCTGACTAGCATctagcacctttttttttttgcatacataTTACCCCAATTTAAAGCCAATGCATGAGGACAAAGCAAACAAGGAGTTTTTAGGGCCAAACAGTGACTGGCTGAGTCAGTCACCTGACAGACTGAGCATGTGTTGTACTTGCTAGAGACCAGACTTCAGGCAAAAAGTCTCAGAAACAAGCAAGAAGTGAGGATAGTTGCAATGTCTGTGGGTCAAAGACTTCTGCCAGTTTTTAAATTTAAGGCAGGCTTACAGACCCATTAACTAGGGGTGGATGATCACTAATCACCCAGTATGGATGTAAAACCCCTCAAATTACAGCTACAACTTTAACCTCGTAGTCATTGTTTAATTTCAATGAACTGGATTACGAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131289 lncRNA upstream 139255 22158057 ~ 22174393 (+) True G97297
TU131286 lncRNA upstream 155690 22156111 ~ 22157958 (+) True G97295
TU131249 lncRNA upstream 220274 22091389 ~ 22093374 (+) True G97263
TU131159 lncRNA upstream 277974 22033797 ~ 22035674 (+) True G97190
XR_005640290.1 lncRNA upstream 306295 22005775 ~ 22007353 (+) True LOC120565815
TU131333 lncRNA downstream 6134 22322492 ~ 22322855 (+) True G97338
TU131429 lncRNA downstream 255396 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA downstream 255437 22571795 ~ 22576548 (+) True LOC120566218
TU131439 lncRNA downstream 278138 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA downstream 278429 22594787 ~ 22595277 (+) True G97410
XM_039812025.1 mRNA upstream 54537 22229405 ~ 22259111 (+) False acbd6
XM_039812024.1 mRNA upstream 54537 22229406 ~ 22259111 (+) True acbd6
XM_039812015.1 mRNA upstream 159315 22134681 ~ 22154333 (+) True sin3b
XM_039812016.1 mRNA upstream 159315 22134681 ~ 22154333 (+) False sin3b
XM_039812017.1 mRNA upstream 179311 22124524 ~ 22134337 (+) True haus5
XM_039810182.1 mRNA downstream 44173 22360531 ~ 22453997 (+) True LOC120564914
XM_039810184.1 mRNA downstream 142103 22458461 ~ 22485160 (+) True si:dkey-21p1.3
XM_039811777.1 mRNA downstream 169153 22485511 ~ 22491235 (+) True LOC120565764
XM_039812090.1 mRNA downstream 176599 22492957 ~ 22501015 (+) True soat1
XM_039812089.1 mRNA downstream 176599 22492957 ~ 22501015 (+) False soat1
TU131315 other upstream 26376 22283646 ~ 22287272 (+) True G97321
TU131036 other upstream 531648 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2781971 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3528012 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4441237 17872278 ~ 17872411 (+) True LOC120566214
XR_005640282.1 other downstream 169153 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 176599 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 255701 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 256111 22572469 ~ 22572551 (+) True LOC120566227
XR_005640356.1 other downstream 256365 22572723 ~ 22572804 (+) True LOC120566222

Expression Profile