RNA id: TU131560


Basic Information

Item Value
RNA id TU131560
length 598
lncRNA type sense_over
GC content 0.41
exon number 2
gene id spata6
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23249129 ~ 23282671 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggCTCCAGACCAGTCCATCCTACTGCGAGCAGATCCACAGCCGAGTCCAGAGAATtctgcagacacacaaaaccaccTGGGGACCACCaaatgacctttgacctttaaCTTCCTGATCTGTCCACAAGCAACCCACCTCCTGCAGTTATTACACAATACTATGAAAAGCCAGCCAGAGTCCGTTTTCATCACATCACGATTCATTTCTTATGGAAtttattcttcttcttgttcCTCTTGCCAGCTCCTTGTGCTGCTTTCTCCGTCACAATGTGCTGGTACTTCTTTTTGTTGTTCCTGATAAGACAAGAGGAAAGTATATTTTGTCTGCAGAAATGGCAATATACTGTCAAGCAAACACCTAAAAATGTGCCCACACGTTAGCAAATGGGGCTGTGGTGTTGCAATGTATTCCGTGACCCATCAGATTCTGTAACCTGATGAGAAATAAGTTTATGATggttacatactgtattttgataGCAGATTGTGATTAAATAGATTTGAAATATGGTGCCCAGTATAGATTTATCTGTACATCGCTAATACCTCACGTCAATATTTGGTCAAACCATCAGtctataataacaataaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131554 lncRNA upstream 362943 22914516 ~ 22918731 (+) True G97489
TU131548 lncRNA upstream 411226 22865827 ~ 22870448 (+) True G97485
XR_005640278.1 lncRNA upstream 481529 22780607 ~ 22800145 (+) True LOC120565733
TU131455 lncRNA upstream 482002 22780774 ~ 22799672 (+) False LOC120565733
TU131444 lncRNA upstream 605496 22657499 ~ 22676178 (+) True rnf11b
TU131568 lncRNA downstream 18173 23300844 ~ 23303691 (+) False LOC120565086
TU131626 lncRNA downstream 40286 23322957 ~ 23323328 (+) False pole4
TU131627 lncRNA downstream 40286 23322957 ~ 23323484 (+) True pole4
TU131625 lncRNA downstream 40418 23323089 ~ 23323484 (+) False pole4
TU131629 lncRNA downstream 41301 23323972 ~ 23324176 (+) True G97537
XM_039811740.1 mRNA upstream 21518 23249129 ~ 23260156 (+) False spata6
XM_039811721.1 mRNA upstream 35359 22816551 ~ 23246315 (+) True agbl4
XM_039811718.1 mRNA upstream 35359 22816551 ~ 23246315 (+) False agbl4
XM_039811719.1 mRNA upstream 35359 22816552 ~ 23246315 (+) False agbl4
XM_039811720.1 mRNA upstream 35359 22952715 ~ 23246315 (+) False agbl4
XM_039810442.1 mRNA downstream 18135 23300806 ~ 23303691 (+) True LOC120565086
XM_039810185.1 mRNA downstream 38793 23321464 ~ 23323092 (+) False pole4
XM_039810444.1 mRNA downstream 49107 23331778 ~ 23335697 (+) True ccl44
XM_039810429.1 mRNA downstream 96060 23378731 ~ 23380375 (+) True LOC120565078
XM_039811696.1 mRNA downstream 137273 23419944 ~ 23454783 (+) True si:ch1073-396h14.1
XR_005640351.1 other upstream 705472 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 706526 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 706750 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 707002 22574591 ~ 22574672 (+) True LOC120566225
XR_005640360.1 other upstream 707982 22573630 ~ 22573692 (+) True LOC120566226
TU131620 other downstream 38851 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 192111 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 1499247 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1569630 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1585346 24868017 ~ 24873874 (+) False elovl1b

Expression Profile