RNA id: TU131625


Basic Information

Item Value
RNA id TU131625
length 396
lncRNA type sense_over
GC content 0.32
exon number 1
gene id pole4
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23321464 ~ 23323484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGATTAAATGCTGCTTCAAAAGACGACAACATTACATATCTGCAACCATCCAAGAAACTTTCCGTTACAGGGACACGATTTGTTGTGAACACCTTTCTGGTACTTTTGTAAGTCAAACTCTCAAAATGGATATTTAGaaataagttgtttttttacaatgtgCCATTTAGATTTGTCATGCTTAACTTTGAAGACATCAGTGGTAATGTGTACATTTTTTCTGTAAATATTTGTGAAATACTACTGTACAATGGAATAAATGTAAGTTTTACAGTTTCTTTTCGAATGAATTAGTCTTCATCAGTTTGTTACATCCCCATTTGCAAGATAAATATTGTCAATCTGTCTGTGATCAATGTTAAAATACCACTTTATAAGGGCTTGAGATTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131568 lncRNA upstream 19398 23300844 ~ 23303691 (+) False LOC120565086
TU131560 lncRNA upstream 40418 23281674 ~ 23282671 (+) False spata6
TU131554 lncRNA upstream 404358 22914516 ~ 22918731 (+) True G97489
TU131548 lncRNA upstream 452641 22865827 ~ 22870448 (+) True G97485
TU131455 lncRNA upstream 523417 22780774 ~ 22799672 (+) False LOC120565733
TU131629 lncRNA downstream 488 23323972 ~ 23324176 (+) True G97537
TU131630 lncRNA downstream 775 23324259 ~ 23324499 (+) True G97538
TU131650 lncRNA downstream 29356 23352840 ~ 23363480 (+) True G97554
TU131656 lncRNA downstream 36574 23360058 ~ 23362720 (+) True G97559
TU131669 lncRNA downstream 55266 23378750 ~ 23380374 (+) False LOC120565078
XM_039810442.1 mRNA upstream 19398 23300806 ~ 23303691 (+) True LOC120565086
XM_039811738.1 mRNA upstream 41253 23249130 ~ 23281836 (+) False spata6
XM_039810444.1 mRNA downstream 8294 23331778 ~ 23335697 (+) True ccl44
XM_039810429.1 mRNA downstream 55247 23378731 ~ 23380375 (+) True LOC120565078
XM_039811696.1 mRNA downstream 96460 23419944 ~ 23454783 (+) True si:ch1073-396h14.1
XM_039810994.1 mRNA downstream 262317 23585801 ~ 23588140 (+) True fam32a
XM_039810986.1 mRNA downstream 267968 23591452 ~ 23599922 (+) True hdgfl2
TU131620 other upstream 1180 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 746887 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 747941 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 748165 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 748417 22574591 ~ 22574672 (+) True LOC120566225
TU131697 other downstream 151298 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 1458434 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1528817 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1544533 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 2209341 25532825 ~ 25547089 (+) True G98194

Expression Profile