RNA id: TU131704


Basic Information

Item Value
RNA id TU131704
length 480
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G97603
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23467638 ~ 23468117 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCcctaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacatttttgcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcgtttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttgtgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131703 lncRNA upstream 645 23466740 ~ 23466993 (+) True G97602
TU131702 lncRNA upstream 978 23465238 ~ 23466660 (+) True G97601
TU131698 lncRNA upstream 6270 23460283 ~ 23461368 (+) True G97597
TU131670 lncRNA upstream 41840 23401029 ~ 23425798 (+) True G97572
TU131669 lncRNA upstream 87264 23378750 ~ 23380374 (+) False LOC120565078
TU131706 lncRNA downstream 5155 23473272 ~ 23473641 (+) True G97605
TU131714 lncRNA downstream 25934 23494051 ~ 23497882 (+) True G97613
TU131715 lncRNA downstream 27718 23495835 ~ 23497882 (+) False G97613
TU131718 lncRNA downstream 32859 23500976 ~ 23502578 (+) True G97615
TU131789 lncRNA downstream 179756 23647873 ~ 23648199 (+) False cdc34a
XM_039811696.1 mRNA upstream 12855 23419944 ~ 23454783 (+) True si:ch1073-396h14.1
XM_039810429.1 mRNA upstream 87263 23378731 ~ 23380375 (+) True LOC120565078
XM_039810444.1 mRNA upstream 131941 23331778 ~ 23335697 (+) True ccl44
XM_039810185.1 mRNA upstream 144546 23321464 ~ 23323092 (+) False pole4
XM_039810442.1 mRNA upstream 163947 23300806 ~ 23303691 (+) True LOC120565086
XM_039810994.1 mRNA downstream 117684 23585801 ~ 23588140 (+) True fam32a
XM_039810986.1 mRNA downstream 123335 23591452 ~ 23599922 (+) True hdgfl2
XM_039810987.1 mRNA downstream 123336 23591453 ~ 23599922 (+) False hdgfl2
XM_039810413.1 mRNA downstream 132199 23600316 ~ 23627747 (+) True ap3d1
XM_039810416.1 mRNA downstream 132199 23600316 ~ 23627747 (+) False ap3d1
TU131620 other upstream 145729 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 891436 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 892490 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 892714 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 892966 22574591 ~ 22574672 (+) True LOC120566225
TU131697 other downstream 6665 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 1313801 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1384184 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1399900 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 2064708 25532825 ~ 25547089 (+) True G98194

Expression Profile