RNA id: TU131706


Basic Information

Item Value
RNA id TU131706
length 370
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G97605
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23473272 ~ 23473641 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTCAACATCAGCCCAGGCTGTAGTTTGTGCTTGGACTCAGGCTTCTGCAACTGTTAGCATGTTACTGTTCTATGGTAGCCTAATGTAAAAGTATGAACTGATCATTAGTTTTAGGATTATATTTGAGgggtataaataataataaataatctcAAAAGCTGCCACTAACAACAAATCATTACCAAAGTCATTGAGATTCATCCCTTAAGGATGAGGGATCTGTCAACCAAATTAAATAGCATAGCATCCAACTGTTGGAATATAATTCATACTGGAACCAATTTACATTGCCAGCCTTTAAACCATGACAGTAGTGTAGCTAAAACAATGGCAAGAAATGCATTAAACATGTTTCTCAGACCTTAAAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG:

id description
ko00360 Phenylalanine metabolism
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis
ko04146 Peroxisome
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131704 lncRNA upstream 5155 23467638 ~ 23468117 (+) True G97603
TU131703 lncRNA upstream 6279 23466740 ~ 23466993 (+) True G97602
TU131702 lncRNA upstream 6612 23465238 ~ 23466660 (+) True G97601
TU131698 lncRNA upstream 11904 23460283 ~ 23461368 (+) True G97597
TU131670 lncRNA upstream 47474 23401029 ~ 23425798 (+) True G97572
TU131714 lncRNA downstream 20410 23494051 ~ 23497882 (+) True G97613
TU131715 lncRNA downstream 22194 23495835 ~ 23497882 (+) False G97613
TU131718 lncRNA downstream 27335 23500976 ~ 23502578 (+) True G97615
TU131789 lncRNA downstream 174232 23647873 ~ 23648199 (+) False cdc34a
TU131791 lncRNA downstream 174702 23648343 ~ 23650456 (+) False cdc34a
XM_039811696.1 mRNA upstream 18489 23419944 ~ 23454783 (+) True si:ch1073-396h14.1
XM_039810429.1 mRNA upstream 92897 23378731 ~ 23380375 (+) True LOC120565078
XM_039810444.1 mRNA upstream 137575 23331778 ~ 23335697 (+) True ccl44
XM_039810185.1 mRNA upstream 150180 23321464 ~ 23323092 (+) False pole4
XM_039810442.1 mRNA upstream 169581 23300806 ~ 23303691 (+) True LOC120565086
XM_039810994.1 mRNA downstream 112160 23585801 ~ 23588140 (+) True fam32a
XM_039810986.1 mRNA downstream 117811 23591452 ~ 23599922 (+) True hdgfl2
XM_039810987.1 mRNA downstream 117812 23591453 ~ 23599922 (+) False hdgfl2
XM_039810413.1 mRNA downstream 126675 23600316 ~ 23627747 (+) True ap3d1
XM_039810416.1 mRNA downstream 126675 23600316 ~ 23627747 (+) False ap3d1
TU131620 other upstream 151363 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 897070 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 898124 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 898348 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 898600 22574591 ~ 22574672 (+) True LOC120566225
TU131697 other downstream 1141 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 1308277 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1378660 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1394376 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 2059184 25532825 ~ 25547089 (+) True G98194

Expression Profile