RNA id: TU131714


Basic Information

Item Value
RNA id TU131714
length 874
lncRNA type inter_gene
GC content 0.53
exon number 7
gene id G97613
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23494051 ~ 23497882 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTAAATGAACATCTGCCAagcaataaatgtatttatcaaTCACCCTCTGTCAGTTATCATTTACCTGCCATCCATGTCATAAGGCCTCTTAACAGAGCGTCGGTCCTGTTCGTAACGCAGCTGCTCCTGCTGCCGTCGCAGCTCATCACGCTCCCTGAGGATCCTTTCCTGCTCGCGCCGCCTCTCGTACTCTATACGAAGCCTTTCCCGCTCCAAGAACTGGCGCTCCATACGGTCCGCGTCGAGGCGCTGCTTCTCAGCCTCCAGCCAGTTTCTCTTCCGGATCaagtgtttcctctcctctttttctcgGAACAGACGGATTCGCTCGCGCTCACCACGTTCGGGACGGTTGTCACGGTCCCGGCTATTGCATCTGCGTCTTTCCACCTCTCGGATCTCCCTCTCTcgttgtctctgtctctccctctccctctgctccttGATCTGGTCAAATGACAGGATATCTTTCGTCTCCTTACTGGCTGACTTGCGGTCCCGACTCTTTGTGCTTCGTTCCTTGCTTTTGGTTTTGACACTGATGACAGGCTCTCCTTTGGACTTGTCCATAACTACAGTCCTCTCATTTCGCCCTTTGCCATCTTTTCCTTCTCCCTCAGTCTTCTCATCAGACTTTGAGTCAGTGGATTGCCTCCTGTCACTGCCAGACTTCTTGGGGTCATTCTTGTCTGCTGGCTTCTTCCCAGCGGGCTCATTTTTAGCCCGCTCCACAGAGATCATCCTGCCATGCAGCTCAGTCCTGTGAAGGTCGCTGATACACTTGGTGGCCTCCTCTGTGGAAGACATAGTGACAAAACCATAGCAGCGAGCCCCGGGGCTCTTGGCGTTGGTCACCACCTTGGCTCCAACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131706 lncRNA upstream 20410 23473272 ~ 23473641 (+) True G97605
TU131704 lncRNA upstream 25934 23467638 ~ 23468117 (+) True G97603
TU131703 lncRNA upstream 27058 23466740 ~ 23466993 (+) True G97602
TU131702 lncRNA upstream 27391 23465238 ~ 23466660 (+) True G97601
TU131698 lncRNA upstream 32683 23460283 ~ 23461368 (+) True G97597
TU131718 lncRNA downstream 3094 23500976 ~ 23502578 (+) True G97615
TU131789 lncRNA downstream 149991 23647873 ~ 23648199 (+) False cdc34a
TU131791 lncRNA downstream 150461 23648343 ~ 23650456 (+) False cdc34a
TU131792 lncRNA downstream 207054 23704936 ~ 23705284 (+) True G97657
TU131820 lncRNA downstream 214215 23712097 ~ 23713463 (+) True G97679
XM_039811696.1 mRNA upstream 39268 23419944 ~ 23454783 (+) True si:ch1073-396h14.1
XM_039810429.1 mRNA upstream 113676 23378731 ~ 23380375 (+) True LOC120565078
XM_039810444.1 mRNA upstream 158354 23331778 ~ 23335697 (+) True ccl44
XM_039810185.1 mRNA upstream 170959 23321464 ~ 23323092 (+) False pole4
XM_039810442.1 mRNA upstream 190360 23300806 ~ 23303691 (+) True LOC120565086
XM_039810994.1 mRNA downstream 87919 23585801 ~ 23588140 (+) True fam32a
XM_039810986.1 mRNA downstream 93570 23591452 ~ 23599922 (+) True hdgfl2
XM_039810987.1 mRNA downstream 93571 23591453 ~ 23599922 (+) False hdgfl2
XM_039810413.1 mRNA downstream 102434 23600316 ~ 23627747 (+) True ap3d1
XM_039810416.1 mRNA downstream 102434 23600316 ~ 23627747 (+) False ap3d1
TU131697 other upstream 16233 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 172142 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 917849 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 918903 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 919127 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 1284036 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1354419 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1370135 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 2034943 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 2232376 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile