RNA id: XM_039810423.1


Basic Information

Item Value
RNA id XM_039810423.1
length 3988
RNA type mRNA
GC content 0.46
exon number 5
gene id cdc34a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23631119 ~ 23650513 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACAGTAGGTTTAGATGGTCGTTAATAACTAGCTAGGGCTCCCCGGGATTGTTCACAACAGAGGAAGCCACACCAGCTCTGACCAAATAAAGCCCCGTCGCGATTTTTAGATCCTGTTTTGAAACCATACTAACGGAAACTAACGTTAACGCGTTCCTGTGCGAAGGGCTTCGTTTTTCTCCTGATAATAGCTAACGTTATTGTTTGTACCGAGCTAGCTTTGTCCTTTGCAGTCACAGCTGTGGTGTGTTGCTGATATATTTATACAAATCGTTGTGGAATATGGCTCAGCATGGACATCATGTAGCCAGTTCCCAAAAAGCACTAATGCTGGAGATGAAAAGTCTCCAAGATGAGCCAGTCGAAGGGTTCAAAATAACTTTGGTGGACGAGTCGGACATGTACAACTGGGAAGTAGCGATATTCGGACCCCCAAATACACACTACGAGGGTGGTTATTTTAAGGCTCGGATCAAGTTCCCCGTCGACTACCCGTACTCTCCACCTGCTTTCCGATTCCTCACCAAAATGTGGCATCCCAACATTTATGAGAACGGTGATGTATGCATCTCTATCCTGCACCCACCGGTGGACGACCCACAGAGCGGAGAGTTGCCTTCAGAGAGGTGGAACCCCACACAGAACGTCAGGACCATCCTGCTCAGCGTGATCTCTTTGCTGAACGAGCCCAACACTTTCTCCCCGGCCAACGTGGACGCATCCGTCATGTACCGCAAGTGGAGGGACAGCAAGGGCAAGGACCGAGAATACATCGAGATCATCAGGAAGCAGGTGGTGGCTACCAAAGCTGAAGCGGAGCGGGACGGCGTCAAGGTTCCCATCACCTTGGACGAGTACTGTGTCCGCACCCAAGTGCCGCCCACAGACGACGGCTCCAACCTCTTGTACGATGACTACTACGACGACGAGGAACTGGAGGAAGACGACGAGGACGACAACGAGGACTGTTGCTATGACGACGATGACTCAGGCACCGAGGACTCCTGACCATGCCCTTCCCGCGATGTCTCCCTCTCGTCCCTGACCGGTCCCCGGCCTCACCCCCtcgccacacagacacacacacacacacacacacacacctccctttCTTGTCATGGACTGAACTTTGACTCCCTGCCCCCTCTTCCTCCTGAATCAACCCCTCATCCTCCTCACTTAGCACAGCCCCCGTCCACCTTCTGTCACATGTGCAGTCACAATATGCACACTAAAACCTGATGCATCGAAGAGAAGAAAGCTACACAGTTGGTTTTGTTTCTtacatgtttctctttttttttcttttttttttttttcttttctttttttcatttgttgtcTGAGTAGAGGTTACACacgatgcacacacacattagcacAGCTTAGGGATAGTAGTACTTCCTCGTCTGCTTCCGTTTGTCTGCACTGATAACTAATAGCTGGTTGAAAAGATCTCCAAGATCTGTTCCTTCCTTTGGCTTTGAGTGGAACAAAGTGTGTCTGATGGCCAAGTTTCTTGTAGAAAATTTGGCGGAGGAACGGTCGCGCCTTTTTCTGACATCATCAGCAGGGTGGAATGTAACGTCACAGGTCAGATCAGAGTAAAACAAGCAGGGAGCATTTGCAAAGTAGGCTaatttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaaaagtCACTTCTGTCTGTGAGCCATGTGTGTGACTTCTGGTTTAGCGGGCTGTTTGAAGCCCTGCCATGCTTCACCTCTGACCTTTCTTGAGCCCCAAGGCTTGTGCTGCACCAAACAGGCAAGTTatccgtttaaaaaaaaaaaagaagctgttcACACTCCCTTGTGCCTTCCCTCCACTCCCTGATATCACAGATCTCAATGACTTGACTGAATGAGCCTGCCTCGGTCAAAGCAGCCAGACATACAAAGGTGGCCGAGGGAGATATTCAAGCTCACAAGGTCTCAGGTGGGGATGCTGTGCAAACGGCCCCCCCacctgaaggaaaaaaaacgtATTCATCGCAGCACCTGTCAGATTTGTCCATGGCGTGAGTGAGAAAGGTGTAAGAACCAACAGCTGAACTGGAAGACTGTAGAATGTAGATCAGAATCCCACAATCGTCCTCTTGACTGCCACGCGGCCTTCAACATATAAGCACGTGCTACTAGTGGCCTGGATGCATtaagaaacagctagctgagcctgctgctgctcctaAAAATccaatgtactgtatttaaaaaaacaacctatgCAGTCAGCGCTTGAACCTACTTAATATGCAGTGCTTTAAACGTGGCAGTAAAGCTGAGCCTTTTCAACAGTCTGACCTGAACTCCAGCTCGACTTTTCCAACCTGTAAGGGCTTTGGACTGACTGCGTCCTTGGTTAGAGATGGACCCGTGTAGTTGTATCtgtcttttatgtttttgtcggTGGTTTGTTATTCTAATTTAGAGTAGCACAAGTCTCCAGAGCGAGCGTGAGATTGTACATCAGCCTTCACCAGAGCTCGCCCCCTAGTGGCGGCTCTGTGTACTGGCTTTGTTTTGGTCCCCCCTCCCTCTGAAATGCTTGACTGGGCCGCAGCCATCTTGACTCACCTTAATCAATGAACCCTGTTACCTCCGATGAGATCAGGTAGCAGTGTGAGTGATTCAGAAGAATGAAAATGGCCTGATGAACATGCAGACTGACGGGGGGGGGATTTGTTTTCAGTCTACGCTGTCAGACGGCCCATTTCGTTTCTTCTCTCCTAACTGCAAGGAGTGCTCTGTTGCACACTTAAGGACCCATCCAACAGTATTTCCGATGAAATTCCCAACCATGTTTCCGTTGTGTGTGCCGACCGTTTATAAGATGTTCTGAGAAGTGTGGAGAAGAAGCAGGAATGGGGATAGGGTTGATCTTTGAGCATGAACAGGAGAATGTTGTTCTTCACTAGCATGCTGTTATGATGTGTTTGTGGTTTTAGATCTGCTATAAGGgtcggggggggaggggggcgttGTGTCCTGAGACAAAGGTCTTCTACTCAATTTTATCTAAACTGTTGCATTATGAATGGGCTGAGGGTTGtctggttttttttgttgttttttttgggcgggcttcttttactgttttgatgtaatcttttatttccaaattgtgGTGCGAGCTGCGATGTTTTCTGTCTTCTATGTATTAAGTGCTGCGAATATTGACCTGATTGTTAAAAACCCAGGATTGTTCATGGAAGGACACGACTAAATGTACCAACTTATTATACACGAATATCATAGCAGCAGAAAATTTGTGCAGAACCAAATTGACACAGCACACTACACAGTAATTGTTCCAGCCTTCTATCAAGCCCAGAATGCTCAGAAAGGAGTTCTCAATACTCAGTAATTGACTGATTTCCATCACACAACCTATGAATGATCCTTCTCCCCTCTGTTTTGAGGGTTTGGGGTGAATggaatttgaatttttttttttttttttttttgtcaaactactGTTACTTTTATCGTCTTTCCTCCCCACTCGTCCCCCAGTTCTCTGAGCTCTGATTGGTGGCAGCATCACTGAGGGTAAAACCCAGCATATAATTACAGAAAACTACAAGAACctcaggaaaaaaacaactaccaactaacaaacaaaacaaatccttTTCCAGCGGAGTGAATCTGACCCCGGGGAGTCTCACTTTTTGGCTTCAAGGGACTGTTTACAATCTCTACCTTGATATGCACATGTGGATATTTGACGATCacttgatgtttgtttttttcttgtttatatttcctttttttcttatgGTTTGTAAATCTATTTAAAATCTGAAATAAAGATCTTTATTAGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K02207 UBE2R, UBC3, CDC34; ubiquitin-conjugating enzyme E2 R

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131718 lncRNA upstream 128541 23500976 ~ 23502578 (+) True G97615
TU131714 lncRNA upstream 133237 23494051 ~ 23497882 (+) True G97613
TU131715 lncRNA upstream 133237 23495835 ~ 23497882 (+) False G97613
TU131706 lncRNA upstream 157478 23473272 ~ 23473641 (+) True G97605
TU131704 lncRNA upstream 163002 23467638 ~ 23468117 (+) True G97603
TU131792 lncRNA downstream 54423 23704936 ~ 23705284 (+) True G97657
TU131820 lncRNA downstream 61584 23712097 ~ 23713463 (+) True G97679
TU131819 lncRNA downstream 62634 23713147 ~ 23713463 (+) False G97679
TU131849 lncRNA downstream 347888 23998401 ~ 24000025 (+) False G97702
TU131850 lncRNA downstream 347888 23998401 ~ 24000222 (+) True G97702
XM_039810413.1 mRNA upstream 3372 23600316 ~ 23627747 (+) True ap3d1
XM_039810416.1 mRNA upstream 3372 23600316 ~ 23627747 (+) False ap3d1
XM_039810420.1 mRNA upstream 3372 23600316 ~ 23627747 (+) False ap3d1
XM_039810418.1 mRNA upstream 3372 23600316 ~ 23627747 (+) False ap3d1
XM_039810415.1 mRNA upstream 3372 23600316 ~ 23627747 (+) False ap3d1
XM_039810215.1 mRNA downstream 9106 23659619 ~ 23666284 (+) True LOC120564946
XM_039811184.1 mRNA downstream 139573 23790086 ~ 23830873 (+) False LOC120565386
XM_039811186.1 mRNA downstream 140547 23791060 ~ 23835654 (+) True LOC120565386
XM_039811187.1 mRNA downstream 140547 23791060 ~ 23830873 (+) False LOC120565386
XM_039811020.1 mRNA downstream 186157 23836670 ~ 23880166 (+) False tle5
TU131697 other upstream 153301 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 309210 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1054917 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1055971 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1056195 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 1131405 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1201788 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1217504 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1882312 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 2079745 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile