RNA id: TU131850


Basic Information

Item Value
RNA id TU131850
length 1822
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G97702
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23998401 ~ 24000222 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTACTTCTTGGCACGGAGCAGTAACTGGAGTGTCCCCTGGTTTCCTGGTAACCTAGTCATGCACATAACCGTCCTGTAAAACAGCAACATGTTGACTTCACACTTCTGGTTATGGTATGGATTAAAGATCGAGATATAGCGTGTTCATTAGTGATCTTtaaaggtgctggtaggtgggtTTTGCttcctttggacagagccaggctagctgctcCCCATTGTTTCCAGACTTTATGCTAAGCgactgctggctgtagcctcatatttacagtacagatGTGGGAGTCGTATCAATCTTCTgctctaactctcagcaagaaatcaaataagcgtatttcccaaagtATTTTCCAAAAGTATGAACTAATTCTTTAAACCTGATTCTTGCTCTTCAGTCCTCCTTGTATCATATTCCAAATTGTCCGGCAAACTGTATATCAGAGCTTTCTGCTTCTGTAGAACATGCGTCACCATTATGTAGACtaaacaggcacattttaagcttttcttttattactcatttatttcagtattttttataaatagttATTGCTCGTCTTATGTAATGATATGTTTATGTATTGGGGTTGCCTATGACTGCGTTTTTGGTTCGGGGGAGCAAACAGAAGGACGCACTCACACATGGGGACGTACAAAATCAAGTAGAACACAGGCgggaaaaatatttttgttcttttaactttctttcttttttttttaaatcagtgtgTTTTTATCCTTGGTGGTGGTGACAGGCAGAGGGCATACAACATCAGCAGTCcaatgtaaagaaaaataaatgaggccctctgttttgtttgttgtttttgttttattcccTTTCTTTTCAAAAGTGTTAGTAAATGTAATGTAGTCTGTTTTCAGTCCTTATTGTGCAGCTGAACTATTTTTCTGTTGAGTCCGTGGTCAGTGTACAGCAGGCGTCGGCTGCGACATGACGATTCAGATTTAGCCATCGAAGAGGTCCCACTTTTTACTGCATGCTTGTTGCACTAAAGCTCCACTTCTGCTGATAGAACGAGACAAATCCAATTTTACTCAGTAGATACAGTGAACGGTCTCACGGCCACAGTTTTACTGTTTAGAATTTTACACTACAGTATGCAACTCAATTCAATTGTATGTTTTAGCGAAATTTGTCCATGTTTCTCACTGCAGCGCTAATGCAGGATAGAAGAATTATGAGGGACTTCTCTAATGGCTACTGTACCAGCGAGGAGTCAGAGATCATCTGTACAGTTCAATGCCTTTGCCTGCCTCTTTCCCTTTCTGCCCGTCAGCCACAGGCAGACCTAAATGATATTCTCATACACAAGCTTGTATACTACTAAGAATGATGCTGTATAATGGCTATGCATTTGGTGGTATAGCGTGAATATTTGGGACATTGTATTTGATACTCTTCTGTAACTGTCAGTAACGTATCTCCCCTCTGCTTGTGCTTTCTCTGTTCCAACAGtataaaaacttttattttccgTTATACAAGCCtgtgtttagtttttcttttaaaaagccaaggattttttttttttttactgcactgTGTCTTCTTCCCTTCTGATGCGTTTCCTATGTGCTGTACAAGAAATACTATGTgtgaaaaataaaccaaactTGTGTTCATCCTTTCAGGTGTCTGCTGTGACggtctttctttcctttttaaatgctgaagaaaaaagccaaataataaaaagagcAATACTTACTCATCGAGAACATCCTTTTCATCCATAATTCTTCCTAAACACcccctcattcactcactatGAGGAAAAGAACTTTATGCACAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131820 lncRNA upstream 284938 23712097 ~ 23713463 (+) True G97679
TU131819 lncRNA upstream 284938 23713147 ~ 23713463 (+) False G97679
TU131792 lncRNA upstream 293117 23704936 ~ 23705284 (+) True G97657
TU131791 lncRNA upstream 347945 23648343 ~ 23650456 (+) False cdc34a
TU131789 lncRNA upstream 350202 23647873 ~ 23648199 (+) False cdc34a
TU131884 lncRNA downstream 90321 24090543 ~ 24091319 (+) True G97728
TU131961 lncRNA downstream 204143 24204365 ~ 24208101 (+) False cks2
TU131962 lncRNA downstream 208007 24208229 ~ 24209290 (+) True G97788
TU131964 lncRNA downstream 211638 24211860 ~ 24213859 (+) True G97789
TU131983 lncRNA downstream 254248 24254470 ~ 24256081 (+) True G97807
XM_039810385.1 mRNA upstream 17 23913948 ~ 23998384 (+) True tle2b
XM_039810382.1 mRNA upstream 17 23914092 ~ 23998384 (+) False tle2b
XM_039810384.1 mRNA upstream 17 23914092 ~ 23998384 (+) False tle2b
XM_039810383.1 mRNA upstream 17 23914092 ~ 23998384 (+) False tle2b
XM_039811019.1 mRNA upstream 118235 23836673 ~ 23880166 (+) False tle5
XM_039812449.1 mRNA downstream 133442 24133664 ~ 24137514 (+) True s1pr3a
XM_039812450.1 mRNA downstream 133442 24133664 ~ 24137514 (+) False s1pr3a
XM_039811047.1 mRNA downstream 168136 24168358 ~ 24183028 (+) True ankrd24
XM_039811050.1 mRNA downstream 204119 24204341 ~ 24208141 (+) True cks2
XM_039810519.1 mRNA downstream 278174 24278396 ~ 24281064 (+) True foxe3
TU131697 other upstream 520583 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 676492 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1422199 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1423253 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1423477 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 781696 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 852079 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 867795 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1532603 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1730036 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile