RNA id: TU131884


Basic Information

Item Value
RNA id TU131884
length 777
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G97728
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24090543 ~ 24091319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTACAATATATAAATtgctaaaaataaaagaattacTTAAAGGGAGTGATTCGGTGCCGTTTCCTGCCTTCATGGTCTCGTCATGACCCCCCGACCCACTCTCATGTAAACAAAGACCAAACAAATATTGATCTGAAACTGGCTTGGCTTCAACAGGAAGAGCTTCCACATTTAGAGACAGAAACGAGGAATAAATAGGACAGATGGAAGAAAGAACTTCGGGCTTAATCCTTTCATTCGTTCCCTGTAACTTCGCCTTTACCGCTTTAGAGAGTGTGACTAACGTGCAGAAGAAAATTCCACATATGTACGTTGTGTATGAATGGATACACAAACCAATACATGATTTTgtgaagtgacaaaaaaaaaaataattgtatttaattattcTTAATAAGGAGGtatcttgaagctcatcaatcCAATAATCAACTAATATTCACTGTAATCTTTAGTATAAGCTTTgtccatatacagtacaggccaaaagtttggacacaccttctcattcaatgagtttcctttttattttcatgactatttacattgtagattctcactgaaggcatcaaaactatgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttatattttagattcttcaaagtagccaaagttgcttttttattaataagggacaaaattccactaattaaccctgacaaggcacacctgtgaagtgaaaaccatttcaggtgactacctcatgaagctcattgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131850 lncRNA upstream 90321 23998401 ~ 24000222 (+) True G97702
TU131849 lncRNA upstream 90518 23998401 ~ 24000025 (+) False G97702
TU131851 lncRNA upstream 90589 23998401 ~ 23999954 (+) False G97702
TU131820 lncRNA upstream 377080 23712097 ~ 23713463 (+) True G97679
TU131819 lncRNA upstream 377080 23713147 ~ 23713463 (+) False G97679
TU131961 lncRNA downstream 113046 24204365 ~ 24208101 (+) False cks2
TU131962 lncRNA downstream 116910 24208229 ~ 24209290 (+) True G97788
TU131964 lncRNA downstream 120541 24211860 ~ 24213859 (+) True G97789
TU131983 lncRNA downstream 163151 24254470 ~ 24256081 (+) True G97807
XR_005640189.1 lncRNA downstream 218290 24309609 ~ 24365175 (+) True LOC120565067
XM_039810385.1 mRNA upstream 92159 23913948 ~ 23998384 (+) True tle2b
XM_039810382.1 mRNA upstream 92159 23914092 ~ 23998384 (+) False tle2b
XM_039810384.1 mRNA upstream 92159 23914092 ~ 23998384 (+) False tle2b
XM_039810383.1 mRNA upstream 92159 23914092 ~ 23998384 (+) False tle2b
XM_039811019.1 mRNA upstream 210377 23836673 ~ 23880166 (+) False tle5
XM_039812449.1 mRNA downstream 42345 24133664 ~ 24137514 (+) True s1pr3a
XM_039812450.1 mRNA downstream 42345 24133664 ~ 24137514 (+) False s1pr3a
XM_039811047.1 mRNA downstream 77039 24168358 ~ 24183028 (+) True ankrd24
XM_039811050.1 mRNA downstream 113022 24204341 ~ 24208141 (+) True cks2
XM_039810519.1 mRNA downstream 187077 24278396 ~ 24281064 (+) True foxe3
TU131697 other upstream 612725 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 768634 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1514341 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1515395 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1515619 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 690599 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 760982 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 776698 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1441506 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1638939 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile