RNA id: TU131961


Basic Information

Item Value
RNA id TU131961
length 864
lncRNA type sense_over
GC content 0.40
exon number 3
gene id cks2
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24204341 ~ 24208141 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGAAAACAGCGGCAGATGACAGCAGCTTGTTGCGCTCGCAAACATCGCTAGGAAGTTAGTGAGCTAAGTTAGCGTCTTCACATCACCCGAAAACAACTTTCCGGACTTCAGCTTTGACTTCTATCGACTgaaaatgtcgaaaaaacagATTTACTATTCTGACAAGTATAACGATGAGGACTTCGAGTATAGGCATGTGGTGCTTCCAAAGCAGCTGTCTAAACTGGTGCCCTCCTCCCACCTGATGACAGAAGATGAGTGGAGGGGACTTGGGGTGCAACAGAGCCAGGGCTGGATTCACTACATGATCCACAAACCAGAGCCACACATACTGCTTTTCAGAAGACCTCTCCCAAAGGATTAAATGGGACCCATCTGTACAATGCCTGCTATCATCTTTGCTGATTTGTATTGTCTTTGAACCCATACATCTCTCCTACATACATATCTACATATGTTCTGATGTATTGTGTAGAAAACCCTTAGttgcattgtgttttttgtcttttcaaatTCCCTCAATTTTTTAGAGGTGATGAGAGGCAAACGGCTTGATTCCACTGTGAATGATAACCTTAAAAACAATATGAAGGTGAAAGAGTGCCTGACAATTGtacattttaacacattttttaaatgtcttttgatgccattttgttatgattttattTACGGAGTATCGCACAGGCATAGgtttttctgtatttctctctctctcccccactaTTTTCCCAAAAGTTTTCTGTTTTCCTGTTCTttaaatgtatgtttgtgttgtgtacaTAATATTATTTCTAGATATTATAAATGTTGTCACTGAGTCTTGGGTGATTCAACATGCCCTTTTTGTTGCTGAAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131884 lncRNA upstream 113046 24090543 ~ 24091319 (+) True G97728
TU131850 lncRNA upstream 204143 23998401 ~ 24000222 (+) True G97702
TU131849 lncRNA upstream 204340 23998401 ~ 24000025 (+) False G97702
TU131851 lncRNA upstream 204411 23998401 ~ 23999954 (+) False G97702
TU131820 lncRNA upstream 490902 23712097 ~ 23713463 (+) True G97679
TU131962 lncRNA downstream 128 24208229 ~ 24209290 (+) True G97788
TU131964 lncRNA downstream 3759 24211860 ~ 24213859 (+) True G97789
TU131983 lncRNA downstream 46369 24254470 ~ 24256081 (+) True G97807
XR_005640189.1 lncRNA downstream 101508 24309609 ~ 24365175 (+) True LOC120565067
TU132089 lncRNA downstream 303870 24511971 ~ 24513033 (+) True G97896
XM_039811047.1 mRNA upstream 21337 24168358 ~ 24183028 (+) True ankrd24
XM_039812449.1 mRNA upstream 66851 24133664 ~ 24137514 (+) True s1pr3a
XM_039812450.1 mRNA upstream 66851 24133664 ~ 24137514 (+) False s1pr3a
XM_039810385.1 mRNA upstream 205981 23913948 ~ 23998384 (+) True tle2b
XM_039810382.1 mRNA upstream 205981 23914092 ~ 23998384 (+) False tle2b
XM_039810519.1 mRNA downstream 70295 24278396 ~ 24281064 (+) True foxe3
XM_039810520.1 mRNA downstream 79003 24287104 ~ 24288689 (+) True foxd2
XM_039810628.1 mRNA downstream 273602 24481703 ~ 24488751 (+) True scyl3
XM_039810629.1 mRNA downstream 273602 24481703 ~ 24488751 (+) False scyl3
XM_039812307.1 mRNA downstream 307333 24515434 ~ 24519540 (+) True sele
TU131697 other upstream 726547 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 882456 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1628163 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1629217 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1629441 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 573817 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 644200 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 659916 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1324724 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1522157 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile