RNA id: TU131962


Basic Information

Item Value
RNA id TU131962
length 908
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G97788
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24208229 ~ 24209290 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTGACAACTAGTGGAGTAACAAATTCCGAGTGTCTAATGCCCAGGGAGTAGGTTGGTGCCCTGGCGTCTTGGCTAAGTCCACAGATGGTCCCCCTCTGCTGTAACTACCTGACATTGTGTAGCTTGAGCTGGATTGCTTGTTTGGAACTTGAGGGCCCATGAGCGGAGGGAGACAGTACCTGTTGGGAGCAGGTACTGAGTCAACACTCCGGTAGTGTGTCCTAGAGCCCATTGTGTAGGATGGAGGTCTGTGCTGGAGGTTGCATGGTGGGGTTTTCTCAGGGCTGTATGCACCTGGTCCAGGTGTCTGGAATAGCTCCTCTAGTGAACAGAAAACCGTTGAATAATATAAACCATGAACTCAGCAACATATGGTAGAGTGTGTCTACTTAAGTGGGGTTTAGATTTTCAGTTGTAACAGCTGACGCTAGCTCTCTAGAAGTAATGCCAGacacaaatgttttttgtacAAGGGTTCATCCTTTCACAATAATGGAGCAGTTAGTTTGGtcttagttaaaaaaaatgcttcatTACAACATGTACATGAATCTGAAACAAAATGTGCACTCAAAATAGCAGTTGTTGAAGAGGAACTTACTCTGCGCTTTCACTCTGCCCAACATTGAGTATGCAGGTGTGCCATCCCTTCCAAAACGAGTGATTTTTGCATCAATGTGATACTGCGGCCCTGGACTTGAGTCTACACAATACACTGCAGCAAAAGTAAATATTTATGATCAATTCAAAATAATATATCCTTTGTCGGTTTGGTTTGATCATGCAATGGTCCTAAAATAGACTGGCTACAGAATTAGGAGGCGTTGTCTCCCTCTACAGGTTCTAATTTGACATGGCACCAATTAAGATGTGTACACTGGGACTTCTTGTGATGCATTTGAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131961 lncRNA upstream 128 24204365 ~ 24208101 (+) False cks2
TU131884 lncRNA upstream 116910 24090543 ~ 24091319 (+) True G97728
TU131850 lncRNA upstream 208007 23998401 ~ 24000222 (+) True G97702
TU131849 lncRNA upstream 208204 23998401 ~ 24000025 (+) False G97702
TU131851 lncRNA upstream 208275 23998401 ~ 23999954 (+) False G97702
TU131964 lncRNA downstream 2570 24211860 ~ 24213859 (+) True G97789
TU131983 lncRNA downstream 45180 24254470 ~ 24256081 (+) True G97807
XR_005640189.1 lncRNA downstream 100319 24309609 ~ 24365175 (+) True LOC120565067
TU132089 lncRNA downstream 302681 24511971 ~ 24513033 (+) True G97896
TU132146 lncRNA downstream 429176 24638466 ~ 24642085 (+) True G97938
XM_039811050.1 mRNA upstream 88 24204341 ~ 24208141 (+) True cks2
XM_039811047.1 mRNA upstream 25201 24168358 ~ 24183028 (+) True ankrd24
XM_039812449.1 mRNA upstream 70715 24133664 ~ 24137514 (+) True s1pr3a
XM_039812450.1 mRNA upstream 70715 24133664 ~ 24137514 (+) False s1pr3a
XM_039810384.1 mRNA upstream 209845 23914092 ~ 23998384 (+) False tle2b
XM_039810519.1 mRNA downstream 69106 24278396 ~ 24281064 (+) True foxe3
XM_039810520.1 mRNA downstream 77814 24287104 ~ 24288689 (+) True foxd2
XM_039810628.1 mRNA downstream 272413 24481703 ~ 24488751 (+) True scyl3
XM_039810629.1 mRNA downstream 272413 24481703 ~ 24488751 (+) False scyl3
XM_039812307.1 mRNA downstream 306144 24515434 ~ 24519540 (+) True sele
TU131697 other upstream 730411 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 886320 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1632027 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1633081 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1633305 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 572628 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 643011 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 658727 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1323535 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1520968 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile