RNA id: TU131964


Basic Information

Item Value
RNA id TU131964
length 1378
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G97789
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24211860 ~ 24213859 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCGTTTGTTTTAAAAAGCACACATTTTGATATGAGGAGGGGCTCAATGAATCAAATTTGGTCCATTTACAGAAATTCAAAACGTCATTCTTAATTTTTAAGTTGATTGCTTAACAAATCaaaatttaacaaaaaacaaaaatagcttATGAACTGTACAATCAAATCGTAAGGTAGGTAAGGTGAAAGGTGACTTGAGAGTAGATGATGTTGGTGCCTTGGTACGACTGGTGTGTCCTGGTGGACCAGTTTGAGTCGGTCAGAGACCTTTGTTACATGTCAGTCCGCTTCTCCATCTTTATGTTTCCTGTCAACCTCTACTGTGCTGTCTAATAAAAGCAAACGCCCATAGAAAACATTTGAGCTTATGTTTCCGTAAAGCATATGGTTAGCATATGTCTTTTTCCAGCAGGATACCAGCACAGGAATTTCATCAAACATTTCAATAATTGGGTTAAAGCTTGCtatgaaagaagaagaaaaaaaaaaaaagcctttgacACAACATATCTGTGTTTGAACACAAAGAACCACAAGGGCAGAAAGTTGACTGTATTGCCGGGCAttgaccaaaaaaataaaattaaaatgatatGACCTCTAGCTACAAATAAATACCACAGatagaaaatataacaaaatattttgCTTAAAGTCAGGTGTAATTACAAACATAAATACTTGATTATTTCTTCTAGTGATTATAAAAGGCAGTACAGTGAATAAAAAAAGACGCTATGGTGCCTATTGGTGACCAGGTGTctggaggaagaaaaaagaaaatagtctgGAGGACACTACCTTAATAGCTGTGTCATACACTGTCACatccaaccacacacacaaatgtataaATGCATCCACACAGACTCCATTCAAAATGatcacacacgcgcgcacacacaacacacacaaaatcatctCTTCCTTCCAGACTGAACATGTCCCAAGACTCTCTTCTCTTTCCATTCACTAGCATATTCACAAATAATGTACAATTTGGAGGTGGGTATGGCTTCACTCTGTGAGCGTTTTCATCGCTCAGGGGTGTTTTTTGTGTCCAGTGTGGGTAGCTGGGTATCTGTTGGCAGGAGCACCTTTTGCTCTACATCCTCCCCATCTTCAGGAAGGTCAAAATGGTCCCCTCCCTCTGCATCAGCAAGGAAAGGCTCCGAATCTGGGTCGTATTCATAGGAGTAGTAGGACACCTCTGCCATGGACCCCTGCTCCTCTTCACCTGGAGAGATCACGGGTGGGGTAGAAAAATGGAGACACAAAGTGGTTGATGACAATATCTCATATACAAAGAAGAAGTACTTCATTTAGTTGCCAAAGAGTAAATAACTGGTTGTAATGGAGACCTAAaaaggtaccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131962 lncRNA upstream 2570 24208229 ~ 24209290 (+) True G97788
TU131961 lncRNA upstream 3759 24204365 ~ 24208101 (+) False cks2
TU131884 lncRNA upstream 120541 24090543 ~ 24091319 (+) True G97728
TU131850 lncRNA upstream 211638 23998401 ~ 24000222 (+) True G97702
TU131849 lncRNA upstream 211835 23998401 ~ 24000025 (+) False G97702
TU131983 lncRNA downstream 40611 24254470 ~ 24256081 (+) True G97807
XR_005640189.1 lncRNA downstream 95750 24309609 ~ 24365175 (+) True LOC120565067
TU132089 lncRNA downstream 298112 24511971 ~ 24513033 (+) True G97896
TU132146 lncRNA downstream 424607 24638466 ~ 24642085 (+) True G97938
TU132243 lncRNA downstream 535169 24749028 ~ 24765225 (+) True LOC120565649
XM_039811050.1 mRNA upstream 3719 24204341 ~ 24208141 (+) True cks2
XM_039811047.1 mRNA upstream 28832 24168358 ~ 24183028 (+) True ankrd24
XM_039812449.1 mRNA upstream 74346 24133664 ~ 24137514 (+) True s1pr3a
XM_039812450.1 mRNA upstream 74346 24133664 ~ 24137514 (+) False s1pr3a
XM_039810383.1 mRNA upstream 213476 23914092 ~ 23998384 (+) False tle2b
XM_039810519.1 mRNA downstream 64537 24278396 ~ 24281064 (+) True foxe3
XM_039810520.1 mRNA downstream 73245 24287104 ~ 24288689 (+) True foxd2
XM_039810628.1 mRNA downstream 267844 24481703 ~ 24488751 (+) True scyl3
XM_039810629.1 mRNA downstream 267844 24481703 ~ 24488751 (+) False scyl3
XM_039812307.1 mRNA downstream 301575 24515434 ~ 24519540 (+) True sele
TU131697 other upstream 734042 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 889951 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1635658 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1636712 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1636936 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 568059 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 638442 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 654158 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1318966 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1516399 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2526036 True 806 lncRNA 0.36 2 NC_050570.1 17918220 ~ 17919077 (-)