RNA id: TU132257


Basic Information

Item Value
RNA id TU132257
length 1964
RNA type TUCP
GC content 0.46
exon number 1
gene id G98012
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24781918 ~ 24783881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTAGTTCAAGAAAGATTGCCTGTGTTGttttcttacatttttaataacagGTGTTTTGCTTTTACTCTGTGTTGATTTCTTGAGCCGTTGTTTTTGGATCAAAGCTCCCTCTTTGCCTCGGAAAGTGTCCAAATGAGGCAAAGTGAGTCAGTTCAagcaaatattttcatattacATTTCCAACCGACAACACTGAGAACATAAGTCATTCTTACTTGTGATTTATTCCCTTGCATTAAACAGATAAATAATTCACATTTTAAACAACTGAGAAATACATGTCTTGAATATACAGTGATATAATACATAGAGAATGGGCCTTTGCGTCTTTCTGCTGAAGCCAGTGGCTCAGAAGAAGTGGTGACTCTGTCGAGTTCAGTCTGGCACCCGAGTTAACAAAAATATATGTCGGCTGGGTTCATATTTATTTGTCACTGTGCCTCCTCCGCAGATTCTCCCCTTATTTCATTGCTGCTGTAGGTCCTTTGCTTAAAGCCACAATTGACGTTTCCTCTCAAATCCTTCACACAAAAGGAGACATGGAGTTACTCTTTAGCCAGGCAGATGGAGGAGAACACTGAGGGATATTTACAACGCTCAATGGATTCAGCTGAGTACTGTAACTTTAAACAAGGAGAGTCATGTGTCATCTACAAAGAAATACAGTTGGGGATTATATTGAGTGATCAGAGCTTTATTTCTGATATCAGACTTCATTCTGTGTTTTGCGGCTGTAAGCCATGCTTCAGAGGGGTGCATGCATGCATAGTTCAAGTTCAGGGGTTGAATTGTAGAATATTTTAATATCTTATATCTGTACTGGAATCAGCTCAAGACGTTCTTCCCTGACTTCACAGAGGAGGCTGAAATCATAGTGAGCAGATAGCATTAGTAGAGTTGGCTTCTGCTGTTGACCAGGAGGAGTCGAATGAAAACAAAGATCCACAGGCCAAAAGTACTGTTCAGTCACAACTGCAGTCCAGGTGGGATTTCTTTTCATTAAGTCCATTGAGTTCTTGTTATAATCTTATTTTCTGCTAAGTCTATCCTGCAGAGCTGTTCTTCATATCCTGGCGTGCTCCCGATGGTGAGCTGCATGGTGACGATGAGGCGAATGGGGGTAGGTGTGTTAATGTTGGCAACCCTGGGCCCCCAAACTGAGGGAGGGCGCCTAAAGTGCCTGCTCTAAAACATATTTTGAGGCCTTCGTTGTGCCCAAAAAACATGTTGTTTCTACTGTTTGTCACACTGCTTTGGTTTTGAAATTGGGGTTTTTTTAAATCTAGAAAACAGCGGTTAAATTACATGAAACTGGAAATTTGGACAGATTTTAAGGATGTCAGCCAACTGGGTAGCTGACGTTTAAATTTATATCTCTATTGAGTTTTTGGAGATGTGTCTTGTGTATTTAATGGATAGTTGCTGACAGTGGTGAGAGGTCAAGTGGAAAGTGAAGTGGGGACCAGAGTCACCTCCTGTATACGGGGCCCATAATTCATATGTACAGCCCTGACTAGATGGCGGACACTTGAACTGAGCAGGCCGAGCTTCAGTTGGGGAGCGTGTCCAATCCCAGCGAGGCTGCATGCTGCTTGGCCCTCATACGGAGGTTCTCGATGCTGGTGGTCTTGCTGTTGAGGCTTCCGGGGAGGCCGCCTGGTGCCGCCTGCAGCAGCGGGCTATTCCATACCTGCTGGGCCTGCGACAGGGTCTGGTAGTAGGACTGGCAGGGCAGCGAGCTCAGCGGCGACGGCATGTTGACGTTCATGCCCAGGTAGGGCAAAGAGGACGGCGTGCTCATTTCAAAGGACGGGTAGTGAACCAGGTTGTTGGTGGCGGCCATGTGCTGCCGAAACTGCTCCTGCAGCCGGAAGAGGCTGAGGGGAGATGAAGCGTAGGAGTTGCTCTGCGCCAAACCGCCGGTCACGCTGCTGGAGGACGGCAGCGGGGGGGAGCTCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132243 lncRNA upstream 16693 24749028 ~ 24765225 (+) True LOC120565649
TU132146 lncRNA upstream 139833 24638466 ~ 24642085 (+) True G97938
TU132089 lncRNA upstream 268885 24511971 ~ 24513033 (+) True G97896
XR_005640189.1 lncRNA upstream 416743 24309609 ~ 24365175 (+) True LOC120565067
TU131983 lncRNA upstream 525837 24254470 ~ 24256081 (+) True G97807
TU132259 lncRNA downstream 915 24784796 ~ 24785342 (+) True G98014
TU132260 lncRNA downstream 3450 24787331 ~ 24787540 (+) True G98015
TU132266 lncRNA downstream 49556 24833437 ~ 24835517 (+) False G98019
TU132267 lncRNA downstream 49556 24833437 ~ 24835517 (+) False G98019
TU132269 lncRNA downstream 49556 24833437 ~ 24835517 (+) False G98019
XM_039810187.1 mRNA upstream 6258 24765447 ~ 24775660 (+) True LOC120564918
XM_039811563.1 mRNA upstream 28049 24749017 ~ 24753869 (+) False LOC120565649
XM_039812166.1 mRNA upstream 48759 24728796 ~ 24733159 (+) False LOC120565988
XM_039812165.1 mRNA upstream 48759 24728801 ~ 24733159 (+) True LOC120565988
XM_039812160.1 mRNA upstream 59820 24710527 ~ 24722098 (+) False si:ch211-221n20.8
XM_039810188.1 mRNA downstream 68406 24852287 ~ 24873916 (+) True elovl1b
XM_039810869.1 mRNA downstream 163719 24947600 ~ 24988333 (+) False slc44a5b
XM_039810871.1 mRNA downstream 163719 24947600 ~ 24988333 (+) False slc44a5b
XM_039810873.1 mRNA downstream 163720 24947601 ~ 24988333 (+) False slc44a5b
XM_039810868.1 mRNA downstream 163721 24947602 ~ 24988068 (+) True slc44a5b
TU131697 other upstream 1304100 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1460009 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 2205716 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 2206770 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 2206994 22574843 ~ 22574924 (+) True LOC120566221
TU132285 other downstream 68420 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 84136 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 748944 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 946377 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 1207625 25991506 ~ 26019371 (+) False dot1l

Expression Profile