RNA id: TU132466


Basic Information

Item Value
RNA id TU132466
length 257
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G98177
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25479348 ~ 25479604 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAAGATTACAGCTAAGCAATACATCAAAGCTGTGAGTTTGGGTATGTTTGGGGGAGTGTTTGGAATGATTAAAGAACAATGATGATGAAGCTTCAAGCAGATAAATGAAACACTTGCTCTTTTATTCAAATGTTTGGATTTCTGGTGGAACACACATCTGTGGGTATCATTTTTGGCATCACGCATTGTTATCCATCGTTTATTATACtgacaaatgtttagttttggaagattttgtcttttttttttcctccaa

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132465 lncRNA upstream 116 25423646 ~ 25479232 (+) True G98176
TU132450 lncRNA upstream 220862 25253473 ~ 25258486 (+) True G98163
TU132401 lncRNA upstream 246948 25229382 ~ 25232400 (+) True G98123
TU132407 lncRNA upstream 287510 25191064 ~ 25191838 (+) True G98128
TU132293 lncRNA upstream 588972 24885420 ~ 24890376 (+) True G98033
TU132478 lncRNA downstream 32252 25511856 ~ 25512252 (+) True G98186
TU132480 lncRNA downstream 35446 25515050 ~ 25515742 (+) True G98188
XR_005640183.1 lncRNA downstream 41268 25520872 ~ 25521287 (+) True LOC120565050
TU132488 lncRNA downstream 78509 25558113 ~ 25560035 (+) True G98196
TU132489 lncRNA downstream 78509 25558113 ~ 25608391 (+) False G98196
XM_039811561.1 mRNA upstream 3113 25468399 ~ 25476235 (+) True abhd17ab
XM_039811667.1 mRNA upstream 12345 25458582 ~ 25467003 (+) True zgc:77486
XM_039811666.1 mRNA upstream 15905 25457253 ~ 25463443 (+) False zgc:77486
XM_039810770.1 mRNA upstream 22189 25444399 ~ 25457159 (+) False plin3
XM_039810767.1 mRNA upstream 22189 25444400 ~ 25457159 (+) False plin3
XM_039811164.1 mRNA downstream 122277 25601881 ~ 25613413 (+) True npl
XM_039811880.1 mRNA downstream 174258 25653862 ~ 25663704 (+) True sec22bb
XM_039811881.1 mRNA downstream 174258 25653862 ~ 25663704 (+) False sec22bb
XM_039810898.1 mRNA downstream 198932 25678536 ~ 25729476 (+) True notch2
XM_039811748.1 mRNA downstream 250621 25730225 ~ 25738789 (+) True slc35a3a
TU132285 other upstream 605474 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 605474 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 695467 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 2001530 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 2157439 23321522 ~ 23321909 (+) False pole4
TU132486 other downstream 53221 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 250654 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 511902 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 1313083 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2548368 28027972 ~ 28084387 (+) False pip5k1ca

Expression Profile