RNA id: XR_005640280.1


Basic Information

Item Value
RNA id XR_005640280.1
length 1972
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id LOC120565749
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25786325 ~ 25837747 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGAGGAATCATGGGAAGTTAACTGGCTTAGACCAAACTTTTTAGAACAAGAATCCTCAGACTTTTTGTTGTTTCCTCATACCAGGTCAATGCCTCAAGCTGCGCGGATAGACGGGGCACATTTGTGTCTTTGACTCCCTTTTCACCCACCACACAGGAGGTGAAGGTTGGATCAGAGCTCTGATTTGTCTGCCATACATTCAGACACTTCAGGTAAAGAGAGAAAAATTGCCTACTGTAGTGCCACTTCAGTAACTTGACCGGGCCCGGCCTTCGCTCTGCGTGCATTGAATGAGTTTGGCAGCAGCTGGGCTCCCGTTGATGATGAGCTGGAGAGAGGACAGTAGAGAAAGacGCCCCTGATTCTGCATGAGGAGAGCACATTTGAAAAGCTTTTATGACCTGGCTACTGCGTCACATCAACTGCTAGAAGAACGTACACAAAAATAAGGCTGAACCCGGCTGATCTGTTCAATCACCCAGGAGCGCTGAGGCAGGACCCTGTAAAAGGAGTTCGGACCGAAAGATCACACGTTTGGAAAAATCTGACTTCCAGCCAGGAGACGGATTTGACTCATCATGATCAGATAAAGTGAAAATACTCAAAGCTGAGGCCGATGTCGGGGCGGAGCAAAGACCTAACGGAGGTACTGGATGCCTGCACGTCTCGTGGACCCTCACTGCTGGAGCTGTTGCATAACATGAAAGTCTTTAAGAACTGCACTCTGCAGACTGCTACAGAGCAACAAGACTTTAACACACAATTCAGGGTAAAGAAGGCCAGAGATGGCTTAGTGGTTCCTGGCTTTGCAACTACATTGCTTGCCTGAGTGAAAGAAAGGCCacccaaaagagaaaaagacagagagagagaagaaggatAAAACAGCACTAGCTTACCTCTAGGTTCCTCCCAAAATTGCTATGGGTTGCCAAAATAAGATGTTCCCATACAtctaaactgcattctcaattgCATTTTGAGGGAAAAGAATATTCTCCGCCGGATTATGTTTGTTTCAACCCGTCCTTGTACCAGCGACAGGCGCACGGTGTGAAACGTTTGCAGTTTTAAACATGTGCTTAGCAttgtgaattgaaacaaaataacttaggttaggttaaggaaaagatcatggtttgggttacgCTTGTCAAAAAGAAATCTGGGTTATTCAAAAGTAGACAGGGCTGTTCTGTAAGGCGTGGTTTCTATTACTTGAAATTGTATTGACAGCTATTACTTTTCATCACTATTATTGTCCTTAACTTTTGACGTCCAAAATGTAGAACTTTATCAGATGGCATTacagtttttacattttacctCAGTCTGAAGTACCATCTTAAGTATCTTTGTTAGTCAGCCCGGCAAGTTTCTTCGCTATTGCAATGTCTAATTATTTAGTTTGAGCAGGCTTGATCTTTTTAATGCAAGTAAATATGCCAGTCAAAACGTTAGCAATGCAATAAAATAACTGAAGCTTTTCAAAATATGTGACCATCTTCTAATATGTGACCTATGCTGATTCTATGTTTTTGAATTATTAactgtcacaaaaaaaaatacttttccaatgttttttttcttttttacattagaTGAATCAAATTTCTTGGATATTGATCAATTCAAAGTCACAATTACAACAAATCACAACCCATTGAGATGACCCTAATGATGTCATCATGGTCACCTTGGCTTATCTTgggacaattttttttaaggGCAGCCTACATTACAAACAGGAGCTGTAGGGTTTGACAGAGGACGGGTCTTATTAAGATGCAAATTAGTCTCATTATGGAAAATGTAGGATGCAGGGTTTTTGGAGCTTGATGCTAAGGCTCATACTAAGGACTAAATTAAGAAAATATCGGCCTCTGCTGATTCGATtttgatcatttaaaaaaataaatgtctctCGTGAGTTCCCTAACTTCATAGAAGTGCAATTCAAAATTGCCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132603 lncRNA upstream 45782 25739131 ~ 25740549 (+) True G98280
TU132489 lncRNA upstream 177940 25558113 ~ 25608391 (+) False G98196
TU132490 lncRNA upstream 213456 25558113 ~ 25572875 (+) False G98196
TU132488 lncRNA upstream 226296 25558113 ~ 25560035 (+) True G98196
XR_005640183.1 lncRNA upstream 265044 25520872 ~ 25521287 (+) True LOC120565050
TU132643 lncRNA downstream 46769 25884516 ~ 25925050 (+) True G98312
TU132705 lncRNA downstream 197014 26034761 ~ 26039847 (+) False oaz1a
TU132719 lncRNA downstream 297490 26135237 ~ 26136630 (+) True G98363
TU132720 lncRNA downstream 297530 26135277 ~ 26136630 (+) False G98363
TU132754 lncRNA downstream 354121 26191868 ~ 26194089 (+) True G98384
XM_039812326.1 mRNA upstream 1893 25769993 ~ 25784438 (+) True tmem59l
XM_039812330.1 mRNA upstream 30675 25748875 ~ 25755656 (+) True rex1bd
XM_039811748.1 mRNA upstream 47542 25730225 ~ 25738789 (+) True slc35a3a
XM_039810898.1 mRNA upstream 56855 25678536 ~ 25729476 (+) True notch2
XM_039811881.1 mRNA upstream 122627 25653862 ~ 25663704 (+) False sec22bb
XM_039811584.1 mRNA downstream 3055 25840802 ~ 25937832 (+) True ssbp4
XM_039811583.1 mRNA downstream 3055 25840802 ~ 25937832 (+) False ssbp4
XM_039811585.1 mRNA downstream 70492 25908239 ~ 25937832 (+) False ssbp4
XM_039812115.1 mRNA downstream 101001 25938748 ~ 25951039 (+) True fkbp8
XM_039811384.1 mRNA downstream 113983 25951730 ~ 25983878 (+) True ell
TU132604 other upstream 54154 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 239242 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 912457 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 912457 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 1002450 24781918 ~ 24783881 (+) True G98012
XR_005640198.1 other downstream 153759 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 954940 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2190225 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 2299522 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2934641 28772388 ~ 28774510 (+) False LOC120565530

Expression Profile